Wall clock time and date at job start Mon Mar 30 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30510 * 1 3 3 Si 1.86803 * 120.00438 * 2 1 4 4 H 1.48496 * 109.47275 * 274.98883 * 3 2 1 5 5 H 1.48500 * 109.46579 * 34.98664 * 3 2 1 6 6 H 1.48498 * 109.47333 * 154.98451 * 3 2 1 7 7 C 1.40443 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00285 * 186.00143 * 7 2 1 9 9 C 1.40384 * 119.99815 * 6.00280 * 7 2 1 10 10 N 1.33182 * 126.69533 * 174.33301 * 9 7 2 11 11 C 1.34249 * 105.48890 * 180.02562 * 10 9 7 12 12 C 1.48618 * 126.19802 * 179.97438 * 11 10 9 13 13 C 1.42202 * 126.92793 * 180.02562 * 12 11 10 14 14 C 1.35283 * 103.93253 * 179.97438 * 13 12 11 15 15 O 1.34047 * 106.65504 * 0.02562 * 14 13 12 16 16 N 1.20904 * 111.81495 * 359.97438 * 15 14 13 17 17 N 1.31182 * 107.60861 * 0.22332 * 11 10 9 18 18 O 1.21264 * 110.54538 * 359.60437 * 17 11 10 19 19 H 0.97001 * 119.99557 * 359.97438 * 1 2 3 20 20 H 1.08002 * 128.03494 * 359.97438 * 13 12 11 21 21 H 1.08004 * 126.67188 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1073 -1.3947 5 1 1.4933 2.6199 0.8028 6 1 3.5855 1.4120 0.5920 7 6 2.0073 -1.2163 -0.0005 8 1 3.0829 -1.2189 0.0972 9 6 1.3111 -2.4286 -0.1282 10 7 1.8438 -3.6432 -0.2502 11 6 0.8014 -4.4842 -0.3420 12 6 0.8757 -5.9607 -0.4938 13 6 -0.2169 -6.8655 -0.5930 14 6 0.3732 -8.0767 -0.7153 15 8 1.6964 -7.8641 -0.6859 16 7 1.9603 -6.6906 -0.5633 17 7 -0.2946 -3.7661 -0.2790 18 8 -0.0264 -2.5904 -0.1519 19 1 -0.4849 0.8401 0.0004 20 1 -1.2726 -6.6384 -0.5750 21 1 -0.1250 -9.0297 -0.8160 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921628.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:52 Heat of formation + Delta-G solvation = 111.852404 kcal Electronic energy + Delta-G solvation = -12575.443786 eV Core-core repulsion = 10036.823481 eV Total energy + Delta-G solvation = -2538.620306 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.043 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.60463 -43.15768 -34.61322 -34.21586 -32.85548 -31.32827 -30.35334 -26.64290 -24.19780 -22.77510 -21.28822 -20.55831 -18.49665 -17.28206 -16.96847 -15.92560 -15.53577 -15.30285 -14.30784 -13.59924 -13.13008 -12.87675 -11.77891 -11.70822 -11.50042 -11.11653 -11.00291 -10.55208 -10.28591 -9.97192 -9.52265 -9.22956 -9.08337 -8.28477 -7.16758 -5.11993 1.72042 2.18203 2.76052 2.93457 3.00333 3.34089 3.51692 3.69480 4.06764 4.24106 4.76039 4.93404 5.20182 5.40811 5.59137 5.65937 6.18343 6.39207 6.77923 7.07270 7.77773 7.97663 8.17240 8.35483 8.61365 9.82225 10.16543 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.097920 B = 0.007512 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.879910 B = 3726.390113 C = 3999.545379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.070 3.930 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.411 4.411 8 H 0.116 0.884 9 C 0.303 3.697 10 N -0.592 5.592 11 C 0.219 3.781 12 C 0.117 3.883 13 C -0.205 4.205 14 C -0.076 4.076 15 O 0.105 5.895 16 N -0.334 5.334 17 N -0.442 5.442 18 O 0.057 5.943 19 H 0.294 0.706 20 H 0.174 0.826 21 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -5.774 -0.768 5.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.156 4.156 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.448 4.448 8 H 0.134 0.866 9 C 0.113 3.887 10 N -0.336 5.336 11 C -0.053 4.053 12 C -0.042 4.042 13 C -0.228 4.228 14 C -0.158 4.158 15 O 0.034 5.966 16 N -0.036 5.036 17 N -0.172 5.172 18 O 0.006 5.994 19 H 0.105 0.895 20 H 0.192 0.808 21 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.612 -5.948 -0.789 6.032 hybrid contribution -0.701 0.915 0.013 1.153 sum -1.314 -5.033 -0.776 5.259 Atomic orbital electron populations 1.69632 1.07838 1.31062 1.30293 1.26231 0.95164 1.02428 0.91732 0.85767 0.80228 0.78275 0.79557 1.18844 1.19594 1.17845 1.18646 0.95586 0.85420 1.45179 0.86600 1.24216 0.79530 0.93893 0.91092 1.72473 1.27320 0.98622 1.35180 1.21786 0.87484 0.91540 1.04493 1.20392 0.88792 0.91587 1.03397 1.22754 1.01533 0.91111 1.07392 1.25862 0.83727 1.01036 1.05136 1.84861 1.24438 1.21021 1.66268 1.74208 1.22828 0.89061 1.17550 1.74563 1.23124 0.91385 1.28078 1.85535 1.26126 1.17765 1.69999 0.89494 0.80813 0.76613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.07 12.08 55.57 0.67 -18.40 14 2 C 0.07 1.67 5.50 -17.28 -0.09 1.58 14 3 Si 0.94 17.39 29.57 -169.99 -5.03 12.36 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 14 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 7 C -0.41 -10.88 9.48 -37.94 -0.36 -11.24 14 8 H 0.12 2.90 7.86 -52.49 -0.41 2.49 14 9 C 0.30 8.76 7.80 -16.33 -0.13 8.63 14 10 N -0.59 -17.22 11.63 -11.63 -0.14 -17.36 14 11 C 0.22 5.92 8.09 -156.55 -1.27 4.65 14 12 C 0.12 2.63 7.29 -82.45 -0.60 2.03 14 13 C -0.21 -3.45 11.15 -39.11 -0.44 -3.88 14 14 C -0.08 -0.98 12.28 29.68 0.36 -0.62 14 15 O 0.11 1.73 11.18 17.16 0.19 1.92 14 16 N -0.33 -7.13 12.11 33.32 0.40 -6.73 14 17 N -0.44 -12.22 12.19 31.46 0.38 -11.84 14 18 O 0.06 1.66 9.74 15.15 0.15 1.81 14 19 H 0.29 6.46 8.29 -40.82 -0.34 6.12 14 20 H 0.17 2.59 8.06 -52.49 -0.42 2.16 14 21 H 0.22 1.46 8.06 -52.48 -0.42 1.04 14 LS Contribution 213.66 15.07 3.22 3.22 Total: -1.00 -32.05 213.66 -3.06 -35.11 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -0.39 Total: -1.25 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.52 Total: 1.15 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 1.32 Total: -54.32 kcal Atomic # 8 Polarization: 3.39 SS G_CDS: 0.34 Total: 3.73 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -32.05 -3.06 -35.11 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921628.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.958 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds