Wall clock time and date at job start Mon Mar 30 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30510 * 1 3 3 Si 1.86803 * 120.00438 * 2 1 4 4 H 1.48496 * 109.47275 * 274.98883 * 3 2 1 5 5 H 1.48500 * 109.46579 * 34.98664 * 3 2 1 6 6 H 1.48498 * 109.47333 * 154.98451 * 3 2 1 7 7 C 1.40443 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00285 * 186.00143 * 7 2 1 9 9 C 1.40384 * 119.99815 * 6.00280 * 7 2 1 10 10 N 1.33182 * 126.69533 * 174.33301 * 9 7 2 11 11 C 1.34249 * 105.48890 * 180.02562 * 10 9 7 12 12 C 1.48618 * 126.19802 * 179.97438 * 11 10 9 13 13 C 1.42202 * 126.92793 * 180.02562 * 12 11 10 14 14 C 1.35283 * 103.93253 * 179.97438 * 13 12 11 15 15 O 1.34047 * 106.65504 * 0.02562 * 14 13 12 16 16 N 1.20904 * 111.81495 * 359.97438 * 15 14 13 17 17 N 1.31182 * 107.60861 * 0.22332 * 11 10 9 18 18 O 1.21264 * 110.54538 * 359.60437 * 17 11 10 19 19 H 0.97001 * 119.99557 * 359.97438 * 1 2 3 20 20 H 1.08002 * 128.03494 * 359.97438 * 13 12 11 21 21 H 1.08004 * 126.67188 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1073 -1.3947 5 1 1.4933 2.6199 0.8028 6 1 3.5855 1.4120 0.5920 7 6 2.0073 -1.2163 -0.0005 8 1 3.0829 -1.2189 0.0972 9 6 1.3111 -2.4286 -0.1282 10 7 1.8438 -3.6432 -0.2502 11 6 0.8014 -4.4842 -0.3420 12 6 0.8757 -5.9607 -0.4938 13 6 -0.2169 -6.8655 -0.5930 14 6 0.3732 -8.0767 -0.7153 15 8 1.6964 -7.8641 -0.6859 16 7 1.9603 -6.6906 -0.5633 17 7 -0.2946 -3.7661 -0.2790 18 8 -0.0264 -2.5904 -0.1519 19 1 -0.4849 0.8401 0.0004 20 1 -1.2726 -6.6384 -0.5750 21 1 -0.1250 -9.0297 -0.8160 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921628.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:52 Heat of formation + Delta-G solvation = 86.535812 kcal Electronic energy + Delta-G solvation = -12576.541596 eV Core-core repulsion = 10036.823481 eV Total energy + Delta-G solvation = -2539.718116 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.043 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -46.07899 -45.20086 -36.39960 -36.18479 -34.58883 -32.75532 -32.33239 -28.68241 -25.95413 -24.39483 -23.15709 -22.24182 -20.19338 -18.78504 -18.56496 -18.00363 -17.46390 -17.01399 -16.01534 -15.28220 -14.61597 -14.18699 -13.76996 -13.48561 -13.13226 -12.84054 -12.63293 -12.33493 -11.97986 -11.79098 -11.20775 -11.10880 -10.71790 -10.22414 -9.03282 -7.21151 0.20955 0.79433 1.05426 1.39613 1.60928 1.65195 2.13608 2.16927 2.32694 2.66552 2.92256 3.09191 3.39310 4.02649 4.16902 4.35386 4.75877 4.87064 5.00678 5.13280 5.72327 5.92918 6.11480 6.34369 7.27335 7.96987 8.08911 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.097920 B = 0.007512 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.879910 B = 3726.390113 C = 3999.545379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.028 3.972 3 Si 1.026 2.974 4 H -0.254 1.254 5 H -0.254 1.254 6 H -0.249 1.249 7 C -0.425 4.425 8 H 0.123 0.877 9 C 0.270 3.730 10 N -0.631 5.631 11 C 0.222 3.778 12 C 0.058 3.942 13 C -0.220 4.220 14 C -0.024 4.024 15 O 0.128 5.872 16 N -0.366 5.366 17 N -0.460 5.460 18 O 0.026 5.974 19 H 0.310 0.690 20 H 0.188 0.812 21 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -6.260 -0.949 6.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.194 4.194 3 Si 0.842 3.158 4 H -0.178 1.178 5 H -0.178 1.178 6 H -0.172 1.172 7 C -0.462 4.462 8 H 0.141 0.859 9 C 0.083 3.917 10 N -0.377 5.377 11 C -0.050 4.050 12 C -0.097 4.097 13 C -0.243 4.243 14 C -0.104 4.104 15 O 0.052 5.948 16 N -0.065 5.065 17 N -0.195 5.195 18 O -0.019 6.019 19 H 0.121 0.879 20 H 0.206 0.794 21 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -0.571 -6.376 -0.959 6.473 hybrid contribution -0.749 0.921 0.059 1.188 sum -1.319 -5.455 -0.900 5.684 Atomic orbital electron populations 1.69671 1.09739 1.33362 1.28768 1.27449 0.96003 1.05800 0.90177 0.84544 0.78708 0.72392 0.80176 1.17834 1.17779 1.17164 1.19217 0.96238 0.86026 1.44738 0.85886 1.24798 0.79906 0.94868 0.92117 1.72436 1.28590 0.99282 1.37353 1.22483 0.86693 0.93730 1.02100 1.20604 0.91527 0.90209 1.07409 1.23008 1.01319 0.91300 1.08688 1.27011 0.81319 1.02119 0.99970 1.84803 1.26651 1.18860 1.64455 1.74207 1.23501 0.90600 1.18223 1.74448 1.23500 0.91109 1.30396 1.85460 1.26206 1.18586 1.71694 0.87852 0.79428 0.69506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.83 12.08 21.91 0.26 -39.56 14 2 C 0.03 1.36 5.50 85.43 0.47 1.83 14 3 Si 1.03 34.39 29.57 68.60 2.03 36.41 14 4 H -0.25 -8.14 7.11 99.48 0.71 -7.44 14 5 H -0.25 -7.81 7.11 99.48 0.71 -7.10 14 6 H -0.25 -8.04 7.11 99.48 0.71 -7.33 14 7 C -0.43 -23.14 9.48 23.33 0.22 -22.91 14 8 H 0.12 6.30 7.86 -2.91 -0.02 6.28 14 9 C 0.27 16.41 7.80 85.07 0.66 17.07 14 10 N -0.63 -38.59 11.63 -305.15 -3.55 -42.14 14 11 C 0.22 12.59 8.09 137.54 1.11 13.70 14 12 C 0.06 2.67 7.29 43.04 0.31 2.98 14 13 C -0.22 -7.00 11.15 22.57 0.25 -6.75 14 14 C -0.02 -0.50 12.28 67.14 0.82 0.32 14 15 O 0.13 3.89 11.18 71.59 0.80 4.69 14 16 N -0.37 -15.59 12.11 -49.46 -0.60 -16.19 14 17 N -0.46 -26.69 12.19 -56.15 -0.68 -27.37 14 18 O 0.03 1.62 9.74 64.30 0.63 2.24 14 19 H 0.31 13.45 8.29 -92.71 -0.77 12.68 14 20 H 0.19 5.30 8.06 -2.91 -0.02 5.27 14 21 H 0.29 1.65 8.06 -2.91 -0.02 1.63 14 Total: -1.00 -75.72 213.66 4.02 -71.70 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.28 Total: 3.99 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 3.86 Total: 6.23 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -4.57 Total: -125.27 kcal Atomic # 8 Polarization: 5.50 SS G_CDS: 1.43 Total: 6.93 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.41 kcal Total: -75.72 4.02 -71.70 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921628.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.234 kcal (2) G-P(sol) polarization free energy of solvation -75.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds