Wall clock time and date at job start Mon Mar 30 2020 02:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30341 * 125.68046 * 2 1 4 4 C 1.34381 * 109.43585 * 180.16713 * 3 2 1 5 5 C 1.33736 * 108.12327 * 359.56541 * 4 3 2 6 6 N 1.36670 * 125.67893 * 179.70122 * 2 1 3 7 7 C 1.34187 * 143.22599 * 0.02562 * 6 2 1 8 8 O 1.21495 * 123.58093 * 359.97438 * 7 6 2 9 9 N 1.34382 * 112.83579 * 179.97438 * 7 6 2 10 10 C 1.37113 * 126.43984 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00771 * 342.06977 * 10 9 7 12 12 C 1.38928 * 119.99751 * 162.06932 * 10 9 7 13 13 N 1.31442 * 120.00333 * 156.52192 * 12 10 9 14 14 Si 1.86801 * 120.00140 * 336.52153 * 12 10 9 15 15 H 1.48502 * 109.46908 * 84.58207 * 14 12 10 16 16 H 1.48496 * 109.47245 * 204.58435 * 14 12 10 17 17 H 1.48496 * 109.47068 * 324.58623 * 14 12 10 18 18 C 1.47318 * 107.11266 * 0.02562 * 9 7 6 19 19 H 1.08995 * 109.47434 * 270.28898 * 1 2 3 20 20 H 1.09000 * 109.47144 * 30.29726 * 1 2 3 21 21 H 1.09008 * 109.47067 * 150.28892 * 1 2 3 22 22 H 1.07999 * 125.94168 * 179.83476 * 4 3 2 23 23 H 0.97002 * 120.00353 * 179.97438 * 13 12 10 24 24 H 1.09001 * 110.58874 * 241.46162 * 18 9 7 25 25 H 1.09003 * 110.59100 * 118.53172 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2672 1.0587 0.0000 4 6 3.5574 0.6828 -0.0037 5 6 3.6013 -0.6538 0.0036 6 7 2.3041 -1.1102 0.0058 7 6 2.2785 -2.4518 0.0124 8 8 1.2536 -3.1043 0.0157 9 7 3.5068 -2.9968 0.0150 10 6 3.8038 -4.3354 0.0221 11 1 3.0521 -5.0539 0.3141 12 6 5.0717 -4.7675 -0.3463 13 7 5.5190 -5.9289 0.0767 14 14 6.1409 -3.6982 -1.4430 15 1 6.8669 -2.7056 -0.6104 16 1 7.1202 -4.5511 -2.1631 17 1 5.2856 -2.9876 -2.4272 18 6 4.4741 -1.8858 0.0101 19 1 -0.3634 0.0052 1.0276 20 1 -0.3633 0.8873 -0.5184 21 1 -0.3634 -0.8926 -0.5094 22 1 4.4106 1.3450 -0.0071 23 1 6.4041 -6.2308 -0.1809 24 1 5.0936 -1.9208 -0.8861 25 1 5.0933 -1.9126 0.9067 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259924930.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:49 Heat of formation + Delta-G solvation = 54.961314 kcal Electronic energy + Delta-G solvation = -13448.601739 eV Core-core repulsion = 11043.347545 eV Total energy + Delta-G solvation = -2405.254194 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.47566 -40.48774 -37.67272 -35.31104 -33.69505 -32.71863 -29.76159 -27.78965 -26.57137 -23.98325 -22.25479 -20.57642 -19.65409 -18.33294 -18.12211 -17.51746 -16.54797 -15.55582 -15.36111 -14.98630 -14.90816 -14.73937 -14.39417 -14.12349 -13.60939 -13.29293 -12.87007 -12.74477 -11.96375 -11.90227 -11.53639 -11.34446 -11.17195 -10.43403 -9.48750 -8.74916 -6.32269 0.08873 1.11748 1.18580 1.27877 1.39227 1.75175 1.97582 2.03263 2.48350 2.85572 2.96882 3.39465 3.55851 3.94411 4.14527 4.25336 4.57515 4.60411 4.73344 4.96717 5.07669 5.41486 5.56120 5.88629 6.09851 6.44089 6.66092 6.82197 7.38509 8.39711 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.048253 B = 0.012458 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.139478 B = 2247.029573 C = 2701.066734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.256 3.744 3 N -0.480 5.480 4 C 0.037 3.963 5 C -0.082 4.082 6 N -0.474 5.474 7 C 0.624 3.376 8 O -0.608 6.608 9 N -0.451 5.451 10 C -0.335 4.335 11 H 0.073 0.927 12 C 0.029 3.971 13 N -0.878 5.878 14 Si 0.940 3.060 15 H -0.218 1.218 16 H -0.271 1.271 17 H -0.269 1.269 18 C 0.135 3.865 19 H 0.098 0.902 20 H 0.121 0.879 21 H 0.068 0.932 22 H 0.225 0.775 23 H 0.293 0.707 24 H 0.103 0.897 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 12.895 -1.499 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.004 4.004 3 N -0.199 5.199 4 C -0.107 4.107 5 C -0.191 4.191 6 N -0.179 5.179 7 C 0.328 3.672 8 O -0.489 6.489 9 N -0.171 5.171 10 C -0.461 4.461 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.513 5.513 14 Si 0.761 3.239 15 H -0.141 1.141 16 H -0.197 1.197 17 H -0.194 1.194 18 C 0.013 3.987 19 H 0.116 0.884 20 H 0.139 0.861 21 H 0.087 0.913 22 H 0.242 0.758 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.744 12.871 -1.452 12.974 hybrid contribution 0.553 -1.311 -0.368 1.469 sum 1.297 11.561 -1.820 11.775 Atomic orbital electron populations 1.20428 0.82092 1.05010 1.05089 1.24382 0.97157 0.77924 1.00909 1.70566 1.02008 1.26066 1.21306 1.22038 0.95500 0.89319 1.03809 1.22838 0.84802 0.96736 1.14708 1.44919 1.10666 1.06878 1.55437 1.15895 0.85683 0.80069 0.85540 1.90746 1.33737 1.63890 1.60512 1.43520 1.03300 1.05763 1.64508 1.18595 1.00033 0.78364 1.49064 0.90873 1.25874 0.97153 0.98114 0.96653 1.69802 1.19789 1.22386 1.39316 0.86069 0.78562 0.79325 0.79922 1.14087 1.19671 1.19430 1.21077 0.92097 0.80138 1.05434 0.88371 0.86054 0.91283 0.75823 0.89620 0.87967 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 10.51 71.24 0.75 -1.12 15 2 C 0.26 9.11 8.20 137.65 1.13 10.24 15 3 N -0.48 -15.68 11.24 -187.54 -2.11 -17.79 15 4 C 0.04 1.10 11.83 83.28 0.99 2.08 15 5 C -0.08 -2.95 7.77 40.74 0.32 -2.63 15 6 N -0.47 -20.07 3.23 -463.82 -1.50 -21.57 15 7 C 0.62 31.99 8.61 179.36 1.54 33.54 15 8 O -0.61 -35.11 17.71 -3.70 -0.07 -35.18 15 9 N -0.45 -22.65 2.92 -655.26 -1.91 -24.57 15 10 C -0.34 -18.97 10.28 84.03 0.86 -18.11 15 11 H 0.07 4.76 8.04 -2.91 -0.02 4.74 15 12 C 0.03 1.49 5.44 84.92 0.46 1.96 15 13 N -0.88 -47.67 13.96 21.66 0.30 -47.37 15 14 Si 0.94 36.87 24.42 68.60 1.67 38.55 15 15 H -0.22 -7.00 6.86 99.48 0.68 -6.32 15 16 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 17 H -0.27 -10.73 6.87 99.48 0.68 -10.05 15 18 C 0.13 5.20 5.45 85.57 0.47 5.66 15 19 H 0.10 2.39 8.14 -2.39 -0.02 2.37 15 20 H 0.12 2.52 8.14 -2.39 -0.02 2.50 15 21 H 0.07 2.12 8.14 -2.38 -0.02 2.10 15 22 H 0.23 4.31 8.06 -2.91 -0.02 4.28 15 23 H 0.29 14.28 8.31 -92.71 -0.77 13.51 15 24 H 0.10 3.68 3.68 -2.39 -0.01 3.67 15 25 H 0.13 4.36 8.14 -2.39 -0.02 4.34 15 Total: -1.00 -68.85 223.06 4.08 -64.77 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.17 Total: 11.54 kcal Atomic # 6 Polarization: 25.10 SS G_CDS: 6.52 Total: 31.61 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -5.22 Total: -111.29 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.07 Total: -35.18 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 1.67 Total: 38.55 kcal Total: -68.85 4.08 -64.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924930.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.731 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds