Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99968 * 2 1 4 4 H 1.48503 * 109.46987 * 269.99708 * 3 2 1 5 5 H 1.48501 * 109.47542 * 30.00162 * 3 2 1 6 6 H 1.48505 * 109.47213 * 150.00381 * 3 2 1 7 7 C 1.37880 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00034 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99816 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.47321 * 126.44348 * 89.99662 * 10 9 7 12 12 C 1.50982 * 103.63946 * 180.02562 * 11 10 9 13 13 C 1.33722 * 146.56063 * 180.02562 * 12 11 10 14 14 N 1.34388 * 108.12255 * 179.97438 * 13 12 11 15 15 C 1.30325 * 109.44459 * 359.97438 * 14 13 12 16 16 N 1.36685 * 108.63843 * 0.02562 * 15 14 13 17 17 C 1.34175 * 143.23742 * 180.32710 * 16 15 14 18 18 O 1.21495 * 123.57776 * 0.02562 * 17 16 15 19 19 H 0.96997 * 119.99457 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47338 * 59.99850 * 9 7 2 21 21 H 1.09006 * 109.47296 * 300.00253 * 9 7 2 22 22 H 1.09001 * 110.58707 * 61.46895 * 11 10 9 23 23 H 1.08998 * 110.72236 * 298.60754 * 11 10 9 24 24 H 1.07996 * 125.94082 * 359.97071 * 13 12 11 25 25 H 1.08000 * 125.68343 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.2911 -3.4007 -1.1850 12 6 4.7546 -4.7130 -0.5997 13 6 5.1926 -5.9521 -0.8464 14 7 5.4083 -6.5615 0.3318 15 6 5.1195 -5.7422 1.3033 16 7 4.7004 -4.5575 0.7657 17 6 4.2705 -3.3263 1.0811 18 8 4.1400 -2.9322 2.2229 19 1 -0.4849 0.8401 0.0004 20 1 3.8753 -0.6797 0.8895 21 1 3.8746 -0.6809 -0.8905 22 1 5.0812 -2.9470 -1.7833 23 1 3.3925 -3.5450 -1.7848 24 1 5.3461 -6.3876 -1.8227 25 1 5.1975 -5.9629 2.3577 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930496.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = 70.661538 kcal Electronic energy + Delta-G solvation = -13110.133902 eV Core-core repulsion = 10705.560521 eV Total energy + Delta-G solvation = -2404.573381 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.17892 -39.04525 -36.03026 -33.65171 -32.30373 -30.28419 -28.11756 -26.24181 -23.90494 -21.64434 -20.89345 -19.95124 -17.37452 -17.08399 -16.40537 -15.85209 -14.76109 -14.14026 -13.96170 -13.54714 -13.50405 -13.28699 -13.04121 -12.56953 -12.01193 -11.33811 -10.82830 -10.62447 -10.39480 -10.06145 -9.99585 -9.73601 -8.79196 -8.69047 -8.14582 -6.27681 -4.30768 1.37894 2.40367 2.94154 3.14164 3.23544 3.24087 3.48536 3.70676 4.21356 4.26228 4.64220 4.80466 5.04758 5.42824 5.48120 5.61603 5.75573 6.22572 6.45402 6.54800 6.92836 7.00106 7.30780 7.51294 7.79975 8.21357 8.48800 8.74484 9.28524 10.85095 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.061888 B = 0.008679 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.321681 B = 3225.375727 C = 3311.857411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.247 3.753 10 N -0.584 5.584 11 C 0.162 3.838 12 C -0.049 4.049 13 C 0.012 3.988 14 N -0.477 5.477 15 C 0.252 3.748 16 N -0.477 5.477 17 C 0.698 3.302 18 O -0.532 6.532 19 H 0.269 0.731 20 H 0.048 0.952 21 H 0.042 0.958 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.181 0.819 25 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 -6.332 -3.724 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.096 0.904 9 C 0.129 3.871 10 N -0.318 5.318 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.131 4.131 14 N -0.194 5.194 15 C -0.029 4.029 16 N -0.182 5.182 17 C 0.399 3.601 18 O -0.404 6.404 19 H 0.079 0.921 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.120 0.880 23 H 0.128 0.872 24 H 0.198 0.802 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.966 -6.505 -2.796 12.226 hybrid contribution -0.088 1.586 -0.071 1.590 sum 9.878 -4.919 -2.867 11.401 Atomic orbital electron populations 1.69882 1.06244 1.27433 1.48961 1.24827 0.94829 0.98985 0.93983 0.86866 0.80541 0.83623 0.78856 1.19680 1.20561 1.18774 1.21285 0.88685 0.95334 1.53255 0.90405 1.19742 0.95949 0.72959 0.98425 1.48046 1.65085 1.15227 1.03454 1.20461 1.02077 0.84033 0.89591 1.22872 1.09122 0.99238 0.84685 1.21353 1.04707 0.89432 0.97584 1.70542 1.20945 1.29912 0.98050 1.25258 0.98516 0.78691 1.00456 1.45178 1.50025 1.12954 1.10081 1.15807 0.78996 0.79045 0.86242 1.90937 1.56563 1.73377 1.19548 0.92145 0.93447 0.93985 0.88013 0.87227 0.80221 0.76789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.48 15 2 C 0.08 2.15 5.47 -17.81 -0.10 2.05 15 3 Si 0.88 20.02 27.47 -169.99 -4.67 15.35 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.26 -5.80 6.54 56.52 0.37 -5.43 15 7 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 15 8 H 0.08 2.37 8.06 -52.49 -0.42 1.94 15 9 C 0.25 5.63 4.94 -5.20 -0.03 5.60 15 10 N -0.58 -11.85 2.99 -181.68 -0.54 -12.40 15 11 C 0.16 2.44 7.63 -4.61 -0.04 2.41 15 12 C -0.05 -0.74 7.76 -81.48 -0.63 -1.37 15 13 C 0.01 0.17 11.83 -18.02 -0.21 -0.05 15 14 N -0.48 -7.09 11.24 -14.47 -0.16 -7.26 15 15 C 0.25 3.78 13.09 -89.00 -1.16 2.61 15 16 N -0.48 -8.41 3.23 -64.73 -0.21 -8.62 15 17 C 0.70 14.85 8.67 -87.81 -0.76 14.08 15 18 O -0.53 -13.14 17.67 5.37 0.09 -13.05 15 19 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.05 1.14 7.06 -51.93 -0.37 0.77 15 21 H 0.04 0.85 7.57 -51.93 -0.39 0.46 15 22 H 0.10 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.11 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.18 1.75 8.06 -52.49 -0.42 1.32 15 25 H 0.22 2.47 8.06 -52.49 -0.42 2.05 15 LS Contribution 230.03 15.07 3.47 3.47 Total: -1.00 -32.87 230.03 -6.56 -39.43 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -2.04 Total: -1.49 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -3.27 Total: 10.05 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.14 Total: -53.76 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.87 -6.56 -39.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930496.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.091 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds