Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99968 * 2 1 4 4 H 1.48503 * 109.46987 * 269.99708 * 3 2 1 5 5 H 1.48501 * 109.47542 * 30.00162 * 3 2 1 6 6 H 1.48505 * 109.47213 * 150.00381 * 3 2 1 7 7 C 1.37880 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00034 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99816 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.47321 * 126.44348 * 89.99662 * 10 9 7 12 12 C 1.50982 * 103.63946 * 180.02562 * 11 10 9 13 13 C 1.33722 * 146.56063 * 180.02562 * 12 11 10 14 14 N 1.34388 * 108.12255 * 179.97438 * 13 12 11 15 15 C 1.30325 * 109.44459 * 359.97438 * 14 13 12 16 16 N 1.36685 * 108.63843 * 0.02562 * 15 14 13 17 17 C 1.34175 * 143.23742 * 180.32710 * 16 15 14 18 18 O 1.21495 * 123.57776 * 0.02562 * 17 16 15 19 19 H 0.96997 * 119.99457 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47338 * 59.99850 * 9 7 2 21 21 H 1.09006 * 109.47296 * 300.00253 * 9 7 2 22 22 H 1.09001 * 110.58707 * 61.46895 * 11 10 9 23 23 H 1.08998 * 110.72236 * 298.60754 * 11 10 9 24 24 H 1.07996 * 125.94082 * 359.97071 * 13 12 11 25 25 H 1.08000 * 125.68343 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.2911 -3.4007 -1.1850 12 6 4.7546 -4.7130 -0.5997 13 6 5.1926 -5.9521 -0.8464 14 7 5.4083 -6.5615 0.3318 15 6 5.1195 -5.7422 1.3033 16 7 4.7004 -4.5575 0.7657 17 6 4.2705 -3.3263 1.0811 18 8 4.1400 -2.9322 2.2229 19 1 -0.4849 0.8401 0.0004 20 1 3.8753 -0.6797 0.8895 21 1 3.8746 -0.6809 -0.8905 22 1 5.0812 -2.9470 -1.7833 23 1 3.3925 -3.5450 -1.7848 24 1 5.3461 -6.3876 -1.8227 25 1 5.1975 -5.9629 2.3577 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930496.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = 48.707735 kcal Electronic energy + Delta-G solvation = -13111.085891 eV Core-core repulsion = 10705.560521 eV Total energy + Delta-G solvation = -2405.525370 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.46892 -40.52696 -37.63438 -35.41918 -34.02287 -31.69149 -29.79378 -27.51341 -25.62323 -23.17718 -22.13754 -21.39025 -19.31603 -18.49129 -17.95006 -17.44524 -16.49714 -15.77423 -15.28113 -14.99626 -14.64679 -14.63328 -14.51198 -14.22843 -13.78648 -13.20517 -12.53880 -12.18103 -12.11896 -11.81881 -11.41785 -11.38607 -10.86601 -10.12700 -9.51224 -8.38882 -6.48915 0.09044 0.96229 1.35986 1.41113 1.49971 1.75788 2.03381 2.29161 2.37087 2.95038 3.04738 3.55413 3.63369 4.29816 4.38147 4.46369 4.53219 4.68398 4.75912 5.28221 5.34657 5.38515 5.63183 6.02466 6.12616 6.53174 6.57607 6.91513 7.16612 8.77956 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.061888 B = 0.008679 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.321681 B = 3225.375727 C = 3311.857411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.245 1.245 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.557 4.557 8 H 0.027 0.973 9 C 0.255 3.745 10 N -0.594 5.594 11 C 0.162 3.838 12 C -0.062 4.062 13 C 0.028 3.972 14 N -0.483 5.483 15 C 0.247 3.753 16 N -0.490 5.490 17 C 0.693 3.307 18 O -0.582 6.582 19 H 0.272 0.728 20 H 0.035 0.965 21 H 0.081 0.919 22 H 0.143 0.857 23 H 0.115 0.885 24 H 0.221 0.779 25 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.115 -6.172 -5.220 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.169 1.169 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.595 4.595 8 H 0.045 0.955 9 C 0.135 3.865 10 N -0.327 5.327 11 C 0.040 3.960 12 C -0.170 4.170 13 C -0.114 4.114 14 N -0.200 5.200 15 C -0.033 4.033 16 N -0.197 5.197 17 C 0.394 3.606 18 O -0.458 6.458 19 H 0.081 0.919 20 H 0.053 0.947 21 H 0.098 0.902 22 H 0.161 0.839 23 H 0.132 0.868 24 H 0.237 0.763 25 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 12.086 -6.416 -4.359 14.361 hybrid contribution -0.777 1.361 0.384 1.614 sum 11.309 -5.054 -3.974 13.009 Atomic orbital electron populations 1.70049 1.08506 1.28802 1.50657 1.25874 0.95676 1.03535 0.93161 0.85664 0.79240 0.77491 0.80291 1.16923 1.20979 1.17108 1.21498 0.91271 0.93569 1.53152 0.95490 1.19505 0.92757 0.74829 0.99383 1.48041 1.64379 1.15008 1.05225 1.20782 1.03658 0.83607 0.87964 1.23123 1.10407 1.00013 0.83486 1.22015 1.02378 0.88399 0.98604 1.70637 1.21025 1.29685 0.98643 1.25954 0.97704 0.77792 1.01854 1.45134 1.50779 1.12308 1.11465 1.16042 0.78654 0.80099 0.85777 1.90881 1.58810 1.74728 1.21405 0.91912 0.94677 0.90166 0.83906 0.86764 0.76267 0.74432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.96 21.45 0.30 -56.82 15 2 C 0.02 0.93 5.47 84.65 0.46 1.40 15 3 Si 0.95 40.57 27.47 68.60 1.88 42.45 15 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.25 -9.86 6.54 99.48 0.65 -9.21 15 7 C -0.56 -31.00 9.94 25.60 0.25 -30.74 15 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 15 9 C 0.25 11.33 4.94 85.63 0.42 11.76 15 10 N -0.59 -23.63 2.99 -847.24 -2.53 -26.17 15 11 C 0.16 4.49 7.63 85.57 0.65 5.14 15 12 C -0.06 -1.74 7.76 40.73 0.32 -1.42 15 13 C 0.03 0.66 11.83 83.28 0.99 1.65 15 14 N -0.48 -13.13 11.24 -199.68 -2.24 -15.38 15 15 C 0.25 7.04 13.09 179.78 2.35 9.39 15 16 N -0.49 -16.82 3.23 -477.33 -1.54 -18.37 15 17 C 0.69 29.60 8.67 179.37 1.55 31.15 15 18 O -0.58 -29.53 17.67 -3.70 -0.07 -29.59 15 19 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 20 H 0.04 1.66 7.06 -2.39 -0.02 1.64 15 21 H 0.08 2.99 7.57 -2.38 -0.02 2.97 15 22 H 0.14 2.78 8.14 -2.39 -0.02 2.76 15 23 H 0.11 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.22 3.22 8.06 -2.91 -0.02 3.19 15 25 H 0.24 5.19 8.06 -2.91 -0.02 5.17 15 Total: -1.00 -74.00 230.03 3.95 -70.05 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.15 Total: 5.50 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 7.00 Total: 28.32 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -6.02 Total: -116.73 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.07 Total: -29.59 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.88 Total: 42.45 kcal Total: -74.00 3.95 -70.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930496.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.757 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds