Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34980 * 125.33447 * 2 1 4 4 C 1.41111 * 107.94267 * 180.02562 * 3 2 1 5 5 S 1.75919 * 142.45928 * 180.36875 * 4 3 2 6 6 C 1.75608 * 91.46850 * 179.97438 * 5 4 3 7 7 C 1.39711 * 125.02581 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99674 * 190.04009 * 7 6 5 9 9 C 1.39979 * 120.00014 * 10.03878 * 7 6 5 10 10 N 1.30918 * 120.00186 * 175.26459 * 9 7 6 11 11 Si 1.86806 * 120.00134 * 355.26368 * 9 7 6 12 12 H 1.48499 * 109.47166 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47061 * 300.00107 * 11 9 7 14 14 H 1.48507 * 109.46816 * 60.00051 * 11 9 7 15 15 C 1.37729 * 109.94640 * 359.68402 * 6 5 4 16 16 C 1.38178 * 114.93492 * 0.24497 * 15 6 5 17 17 N 1.36280 * 125.33501 * 180.02562 * 2 1 3 18 18 H 0.96999 * 125.68130 * 0.02562 * 17 2 1 19 19 H 1.09003 * 109.46490 * 89.97950 * 1 2 3 20 20 H 1.09002 * 109.47237 * 209.97293 * 1 2 3 21 21 H 1.08993 * 109.47468 * 329.97950 * 1 2 3 22 22 H 1.07997 * 126.02928 * 0.04112 * 3 2 1 23 23 H 0.97001 * 119.99766 * 359.31641 * 10 9 7 24 24 H 1.08004 * 122.53896 * 180.22492 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2877 1.1011 0.0000 4 6 3.6343 0.6794 -0.0006 5 16 5.2858 1.2853 0.0059 6 6 5.9327 -0.3472 -0.0028 7 6 7.2918 -0.6712 -0.0029 8 1 7.6036 -1.6913 -0.1715 9 6 8.2491 0.3264 0.2154 10 7 9.5159 0.0091 0.3077 11 14 7.7192 2.1106 0.3751 12 1 8.9137 2.9634 0.6011 13 1 7.0346 2.5371 -0.8717 14 1 6.7880 2.2494 1.5236 15 6 4.9022 -1.2610 -0.0029 16 6 3.6351 -0.7100 -0.0017 17 7 2.2952 -1.1117 -0.0005 18 1 1.9797 -2.0290 -0.0013 19 1 -0.3632 0.0004 -1.0277 20 1 -0.3634 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5141 22 1 1.9426 2.1245 0.0006 23 1 9.7901 -0.9185 0.2347 24 1 5.0717 -2.3277 -0.0041 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935230.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = 34.948637 kcal Electronic energy + Delta-G solvation = -10887.243334 eV Core-core repulsion = 8891.581445 eV Total energy + Delta-G solvation = -1995.661889 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.82184 -34.96157 -33.13569 -30.25737 -29.71410 -27.13688 -22.92764 -21.14025 -19.54553 -18.96451 -18.10850 -16.34966 -14.75236 -14.07606 -13.92187 -13.77028 -12.86208 -12.82317 -12.47640 -12.16487 -11.83426 -11.62259 -11.38961 -10.75620 -10.34593 -9.95153 -9.74962 -9.56240 -8.70990 -8.30993 -7.59018 -7.01105 -6.38353 -4.49851 2.45054 2.61228 3.18053 3.20464 3.33341 3.57143 3.72860 3.94004 4.14270 4.22736 4.98403 5.57125 5.61567 5.86292 6.14505 6.26673 6.41773 6.89150 7.09484 7.25432 7.33173 7.44381 7.82267 7.90821 8.00278 8.25491 8.48824 8.66588 9.78458 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.069730 B = 0.010752 C = 0.009381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.455016 B = 2603.609644 C = 2984.163021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.025 4.025 3 C -0.135 4.135 4 C -0.309 4.309 5 S -0.011 6.011 6 C 0.072 3.928 7 C -0.446 4.446 8 H 0.093 0.907 9 C 0.051 3.949 10 N -0.801 5.801 11 Si 0.919 3.081 12 H -0.229 1.229 13 H -0.202 1.202 14 H -0.200 1.200 15 C -0.359 4.359 16 C 0.141 3.859 17 N -0.581 5.581 18 H 0.399 0.601 19 H 0.058 0.942 20 H 0.052 0.948 21 H 0.070 0.930 22 H 0.119 0.881 23 H 0.289 0.711 24 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 1.810 -0.044 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.133 4.133 3 C -0.164 4.164 4 C -0.423 4.423 5 S 0.240 5.760 6 C -0.047 4.047 7 C -0.481 4.481 8 H 0.110 0.890 9 C -0.172 4.172 10 N -0.423 5.423 11 Si 0.741 3.259 12 H -0.152 1.152 13 H -0.128 1.128 14 H -0.125 1.125 15 C -0.387 4.387 16 C 0.026 3.974 17 N -0.185 5.185 18 H 0.234 0.766 19 H 0.076 0.924 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.137 0.863 23 H 0.101 0.899 24 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.380 4.531 0.210 8.662 hybrid contribution -1.246 -3.648 -0.294 3.866 sum -8.626 0.883 -0.084 8.671 Atomic orbital electron populations 1.20110 0.89349 1.01930 1.01297 1.19687 0.92032 0.86019 1.15545 1.19517 0.89917 0.96199 1.10791 1.22591 0.97125 0.95871 1.26734 1.84048 0.98107 1.10102 1.83779 1.21119 0.96129 0.91685 0.95776 1.20126 0.89650 0.98405 1.39956 0.88951 1.27268 0.92720 1.06755 0.90417 1.70602 1.16734 1.23642 1.31275 0.84555 0.81606 0.74575 0.85137 1.15228 1.12821 1.12490 1.18328 0.87542 0.97707 1.35131 1.18133 0.84168 0.92359 1.02735 1.41640 1.04047 1.06687 1.66135 0.76579 0.92357 0.92849 0.91155 0.86288 0.89901 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.40 36.01 0.37 -0.55 14 2 C -0.02 -0.47 7.12 -81.77 -0.58 -1.05 14 3 C -0.13 -2.88 10.72 -39.65 -0.43 -3.30 14 4 C -0.31 -7.61 7.30 -38.23 -0.28 -7.89 14 5 S -0.01 -0.28 15.33 -107.50 -1.65 -1.93 14 6 C 0.07 1.91 5.98 -39.22 -0.23 1.67 14 7 C -0.45 -11.91 9.70 -38.38 -0.37 -12.29 14 8 H 0.09 2.50 8.05 -52.49 -0.42 2.08 14 9 C 0.05 1.31 5.52 -17.29 -0.10 1.22 14 10 N -0.80 -20.67 13.66 55.55 0.76 -19.91 14 11 Si 0.92 20.03 24.49 -169.99 -4.16 15.87 14 12 H -0.23 -4.69 7.11 56.52 0.40 -4.29 14 13 H -0.20 -4.24 6.29 60.70 0.38 -3.86 14 14 H -0.20 -4.27 6.36 58.97 0.37 -3.89 14 15 C -0.36 -9.28 10.17 -39.79 -0.40 -9.69 14 16 C 0.14 3.44 7.65 -83.95 -0.64 2.80 14 17 N -0.58 -11.71 6.22 -7.04 -0.04 -11.75 14 18 H 0.40 6.62 8.96 -40.82 -0.37 6.26 14 19 H 0.06 0.71 8.14 -51.93 -0.42 0.29 14 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 14 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 14 22 H 0.12 2.24 8.06 -52.49 -0.42 1.82 14 23 H 0.29 7.21 8.72 -40.82 -0.36 6.85 14 24 H 0.10 2.56 8.06 -52.48 -0.42 2.14 14 LS Contribution 220.30 15.07 3.32 3.32 Total: -1.00 -28.92 220.30 -6.54 -35.46 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -2.10 Total: 8.01 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.66 Total: -29.07 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.72 Total: -31.66 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.16 Total: 15.87 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.65 Total: -1.93 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.92 -6.54 -35.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935230.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.406 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds