Wall clock time and date at job start Mon Mar 30 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46957 * 269.99877 * 3 2 1 5 5 H 1.48497 * 109.47312 * 30.00299 * 3 2 1 6 6 H 1.48503 * 109.46920 * 150.00244 * 3 2 1 7 7 C 1.37871 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00696 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99851 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47249 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00195 * 180.02562 * 10 9 7 12 12 O 1.21509 * 119.99692 * 359.97438 * 11 10 9 13 13 C 1.48146 * 120.00046 * 180.02562 * 11 10 9 14 14 C 1.39726 * 120.18431 * 180.27731 * 13 11 10 15 15 C 1.38818 * 117.90032 * 180.21582 * 14 13 11 16 16 C 1.38574 * 118.06807 * 359.50901 * 15 14 13 17 17 N 1.32168 * 120.06951 * 0.25594 * 16 15 14 18 18 N 1.28357 * 122.29793 * 359.97438 * 17 16 15 19 19 H 0.97001 * 119.99699 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47303 * 59.99802 * 9 7 2 21 21 H 1.09003 * 109.46840 * 299.99535 * 9 7 2 22 22 H 0.97007 * 119.99807 * 359.97438 * 10 9 7 23 23 H 1.08001 * 121.04448 * 359.97438 * 14 13 11 24 24 H 1.08002 * 120.96828 * 179.79196 * 15 14 13 25 25 H 1.08004 * 119.96768 * 180.27433 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3249 -2.8217 0.0009 12 8 6.1145 -1.8981 0.0014 13 6 5.8187 -4.2184 0.0002 14 6 7.1916 -4.4782 0.0071 15 6 7.6017 -5.8044 0.0015 16 6 6.6262 -6.7886 -0.0001 17 7 5.3477 -6.4538 -0.0014 18 7 4.9591 -5.2304 -0.0008 19 1 -0.4850 0.8401 0.0004 20 1 3.8746 -0.6809 0.8905 21 1 3.8752 -0.6797 -0.8895 22 1 3.3694 -3.3126 -0.0001 23 1 7.9108 -3.6726 0.0125 24 1 8.6506 -6.0617 0.0030 25 1 6.9110 -7.8304 0.0001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259959650.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:51 Heat of formation + Delta-G solvation = 20.483140 kcal Electronic energy + Delta-G solvation = -12527.185391 eV Core-core repulsion = 10120.436111 eV Total energy + Delta-G solvation = -2406.749280 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12411 -38.77889 -34.53049 -33.26619 -32.83109 -32.17916 -28.17492 -25.29817 -24.60440 -22.23557 -20.45022 -18.40173 -17.36438 -16.90909 -16.29124 -15.39039 -15.10459 -14.66549 -14.18794 -14.05990 -13.40264 -13.01891 -12.38575 -12.27652 -11.53170 -11.06703 -10.80077 -10.44015 -10.11939 -10.01675 -9.87257 -9.62714 -9.48645 -8.79275 -8.26161 -6.20377 -4.23295 0.44237 0.64042 2.89227 3.26413 3.32773 3.40271 3.49060 3.76760 3.98648 4.32810 4.33625 4.53481 4.65484 4.88673 5.13992 5.16515 5.59819 5.75033 5.97524 6.71554 7.00267 7.07806 7.33073 8.03341 8.41382 8.51944 8.65452 8.82443 9.37973 10.91539 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.065505 B = 0.007121 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.344523 B = 3931.333389 C = 4343.531899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.217 3.783 10 N -0.675 5.675 11 C 0.556 3.444 12 O -0.547 6.547 13 C 0.037 3.963 14 C -0.069 4.069 15 C -0.125 4.125 16 C 0.046 3.954 17 N -0.242 5.242 18 N -0.209 5.209 19 H 0.268 0.732 20 H 0.031 0.969 21 H 0.026 0.974 22 H 0.409 0.591 23 H 0.162 0.838 24 H 0.155 0.845 25 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.590 -10.573 0.040 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.101 0.899 9 C 0.095 3.905 10 N -0.322 5.322 11 C 0.337 3.663 12 O -0.425 6.425 13 C -0.110 4.110 14 C -0.099 4.099 15 C -0.154 4.154 16 C -0.117 4.117 17 N -0.085 5.085 18 N -0.056 5.056 19 H 0.078 0.922 20 H 0.048 0.952 21 H 0.044 0.956 22 H 0.245 0.755 23 H 0.180 0.820 24 H 0.173 0.827 25 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 13.334 -10.230 0.041 16.806 hybrid contribution 1.599 0.892 -0.020 1.831 sum 14.933 -9.338 0.021 17.612 Atomic orbital electron populations 1.69885 1.06193 1.27425 1.49211 1.24786 0.94803 0.99096 0.93865 0.86823 0.80562 0.83278 0.79052 1.19808 1.20841 1.18500 1.21082 0.88259 0.95495 1.53479 0.89918 1.19651 0.95689 0.77931 0.97183 1.46167 1.05262 1.11974 1.68819 1.17633 0.83975 0.85720 0.78987 1.90750 1.55783 1.43889 1.52127 1.23191 0.92540 0.96524 0.98721 1.22475 0.96287 0.98312 0.92820 1.22424 1.02200 0.92861 0.97964 1.24478 0.90725 1.01946 0.94586 1.73171 1.16101 1.10381 1.08842 1.73302 1.31292 0.94734 1.06253 0.92214 0.95163 0.95607 0.75468 0.82043 0.82703 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.84 15 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 15 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 15 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 15 7 C -0.55 -15.19 9.83 -34.44 -0.34 -15.53 15 8 H 0.08 2.43 7.84 -52.49 -0.41 2.01 15 9 C 0.22 5.39 4.50 -5.19 -0.02 5.37 15 10 N -0.67 -14.57 5.54 -62.33 -0.35 -14.92 15 11 C 0.56 11.09 7.82 -12.19 -0.10 11.00 15 12 O -0.55 -12.07 16.39 5.36 0.09 -11.98 15 13 C 0.04 0.60 6.83 -82.83 -0.57 0.03 15 14 C -0.07 -0.85 9.73 -38.81 -0.38 -1.22 15 15 C -0.13 -1.10 10.20 -39.24 -0.40 -1.50 15 16 C 0.05 0.45 11.31 -17.28 -0.20 0.25 15 17 N -0.24 -3.47 11.51 30.58 0.35 -3.11 15 18 N -0.21 -3.47 10.75 33.32 0.36 -3.11 15 19 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 20 H 0.03 0.78 7.20 -51.93 -0.37 0.40 15 21 H 0.03 0.66 7.57 -51.93 -0.39 0.26 15 22 H 0.41 8.41 7.68 -40.82 -0.31 8.10 15 23 H 0.16 1.77 7.72 -52.49 -0.41 1.36 15 24 H 0.16 0.70 8.06 -52.49 -0.42 0.28 15 25 H 0.18 0.96 8.06 -52.48 -0.42 0.54 15 LS Contribution 234.49 15.07 3.53 3.53 Total: -1.00 -32.60 234.49 -3.91 -36.51 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -1.91 Total: 1.76 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.09 Total: 0.53 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 1.14 Total: -46.98 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.60 -3.91 -36.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259959650.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.992 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds