Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47299 * 270.00285 * 3 2 1 5 5 H 1.48500 * 109.46874 * 30.00115 * 3 2 1 6 6 H 1.48500 * 109.47104 * 149.99844 * 3 2 1 7 7 C 1.37870 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00019 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00120 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.46709 * 179.97438 * 9 7 2 11 11 C 1.32574 * 124.80352 * 89.95553 * 10 9 7 12 12 C 1.40124 * 115.60001 * 179.97438 * 11 10 9 13 13 N 1.39455 * 140.10688 * 180.02562 * 12 11 10 14 14 H 0.97001 * 125.62934 * 359.73047 * 13 12 11 15 15 C 1.36575 * 108.74310 * 180.02562 * 13 12 11 16 16 C 1.34340 * 109.10320 * 359.97438 * 15 13 12 17 17 C 1.37535 * 113.06990 * 0.02815 * 12 11 10 18 18 S 1.75618 * 124.80662 * 269.97007 * 10 9 7 19 19 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47221 * 60.00270 * 9 7 2 21 21 H 1.08997 * 109.47183 * 299.99618 * 9 7 2 22 22 H 1.08001 * 122.19996 * 0.03311 * 11 10 9 23 23 H 1.07994 * 125.44478 * 179.97438 * 15 13 12 24 24 H 1.07999 * 126.11047 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.2647 -3.3289 -1.0895 12 6 4.7265 -4.6327 -0.8653 13 7 5.1259 -5.7635 -1.5769 14 1 5.1494 -5.8439 -2.5433 15 6 5.4724 -6.7413 -0.6887 16 6 5.3097 -6.2773 0.5615 17 6 4.8376 -4.9429 0.4700 18 16 4.3491 -3.5595 1.4411 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 4.1235 -2.9313 -2.0837 23 1 5.8213 -7.7295 -0.9496 24 1 5.5031 -6.8231 1.4732 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259979735.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = 62.415046 kcal Electronic energy + Delta-G solvation = -10666.746131 eV Core-core repulsion = 8672.275274 eV Total energy + Delta-G solvation = -1994.470856 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.65826 -35.49605 -32.78190 -30.58329 -29.92455 -26.23737 -23.07582 -21.46227 -20.35294 -18.73530 -17.79884 -16.81024 -14.83443 -14.45549 -14.20804 -14.04103 -13.41674 -13.04593 -12.52274 -12.06224 -11.59668 -11.44900 -11.04286 -10.65540 -10.29232 -10.02263 -9.88725 -9.42177 -9.05519 -8.60782 -7.34668 -7.08143 -6.09472 -4.09608 1.73740 2.23276 2.82188 2.98672 3.27280 3.35320 3.37640 3.44084 3.48728 4.38973 5.21701 5.23082 5.42853 5.57560 5.98832 6.16315 6.30366 6.57262 6.76640 6.91245 6.99931 7.16233 7.35369 7.61690 7.82604 8.45927 8.95849 9.49312 11.03283 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.064264 B = 0.008208 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.598534 B = 3410.422422 C = 3490.754417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.045 3.955 10 C -0.080 4.080 11 C -0.156 4.156 12 C 0.058 3.942 13 N -0.566 5.566 14 H 0.412 0.588 15 C 0.017 3.983 16 C -0.162 4.162 17 C -0.231 4.231 18 S 0.106 5.894 19 H 0.265 0.735 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.132 0.868 23 H 0.167 0.833 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.109 -9.335 -1.560 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.197 4.197 11 C -0.187 4.187 12 C -0.058 4.058 13 N -0.168 5.168 14 H 0.248 0.752 15 C -0.114 4.114 16 C -0.192 4.192 17 C -0.350 4.350 18 S 0.366 5.634 19 H 0.075 0.925 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.150 0.850 23 H 0.184 0.816 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.855 -8.946 -0.181 14.068 hybrid contribution 0.349 0.433 -2.043 2.117 sum 11.204 -8.513 -2.223 14.246 Atomic orbital electron populations 1.69893 1.06223 1.27032 1.50346 1.24965 0.94763 0.98947 0.94410 0.86836 0.80502 0.83720 0.78707 1.20083 1.21065 1.18811 1.20930 0.87874 0.94939 1.51673 0.90515 1.18439 0.97521 0.85599 0.97878 1.24338 1.00231 1.01605 0.93571 1.18686 1.09085 0.90866 1.00061 1.18386 1.07060 0.90331 0.90054 1.41853 1.56483 1.10381 1.08061 0.75182 1.21577 1.06932 0.94162 0.88723 1.19994 1.09499 0.92919 0.96753 1.22856 1.15174 1.00602 0.96418 1.83768 1.68579 1.02573 1.08506 0.92511 0.94868 0.94590 0.84979 0.81558 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 14 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 14 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 14 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 14 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 14 6 H -0.26 -6.07 6.54 56.52 0.37 -5.71 14 7 C -0.52 -14.67 9.65 -34.44 -0.33 -15.00 14 8 H 0.08 2.40 7.98 -52.48 -0.42 1.99 14 9 C 0.04 1.08 4.51 -29.03 -0.13 0.95 14 10 C -0.08 -1.74 5.64 -36.21 -0.20 -1.95 14 11 C -0.16 -3.13 10.02 -40.78 -0.41 -3.54 14 12 C 0.06 1.06 7.71 -83.94 -0.65 0.41 14 13 N -0.57 -7.90 6.21 -10.78 -0.07 -7.97 14 14 H 0.41 4.31 8.96 -40.82 -0.37 3.94 14 15 C 0.02 0.21 11.87 -16.81 -0.20 0.01 14 16 C -0.16 -2.46 10.85 -39.58 -0.43 -2.89 14 17 C -0.23 -4.30 7.32 -38.46 -0.28 -4.58 14 18 S 0.11 2.10 23.29 -107.50 -2.50 -0.41 14 19 H 0.26 7.54 8.31 -40.82 -0.34 7.20 14 20 H 0.03 0.79 7.20 -51.93 -0.37 0.42 14 21 H 0.04 0.83 7.57 -51.93 -0.39 0.44 14 22 H 0.13 2.47 8.06 -52.49 -0.42 2.05 14 23 H 0.17 1.35 8.06 -52.49 -0.42 0.93 14 24 H 0.14 1.74 8.06 -52.49 -0.42 1.32 14 LS Contribution 228.90 15.07 3.45 3.45 Total: -1.00 -31.92 228.90 -7.73 -39.66 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -1.99 Total: 0.06 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -2.73 Total: -24.64 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.71 Total: -34.57 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.50 Total: -0.41 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.92 -7.73 -39.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259979735.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.070 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds