Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47299 * 270.00285 * 3 2 1 5 5 H 1.48500 * 109.46874 * 30.00115 * 3 2 1 6 6 H 1.48500 * 109.47104 * 149.99844 * 3 2 1 7 7 C 1.37870 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00019 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00120 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.46709 * 179.97438 * 9 7 2 11 11 C 1.32574 * 124.80352 * 89.95553 * 10 9 7 12 12 C 1.40124 * 115.60001 * 179.97438 * 11 10 9 13 13 N 1.39455 * 140.10688 * 180.02562 * 12 11 10 14 14 H 0.97001 * 125.62934 * 359.73047 * 13 12 11 15 15 C 1.36575 * 108.74310 * 180.02562 * 13 12 11 16 16 C 1.34340 * 109.10320 * 359.97438 * 15 13 12 17 17 C 1.37535 * 113.06990 * 0.02815 * 12 11 10 18 18 S 1.75618 * 124.80662 * 269.97007 * 10 9 7 19 19 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47221 * 60.00270 * 9 7 2 21 21 H 1.08997 * 109.47183 * 299.99618 * 9 7 2 22 22 H 1.08001 * 122.19996 * 0.03311 * 11 10 9 23 23 H 1.07994 * 125.44478 * 179.97438 * 15 13 12 24 24 H 1.07999 * 126.11047 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.2647 -3.3289 -1.0895 12 6 4.7265 -4.6327 -0.8653 13 7 5.1259 -5.7635 -1.5769 14 1 5.1494 -5.8439 -2.5433 15 6 5.4724 -6.7413 -0.6887 16 6 5.3097 -6.2773 0.5615 17 6 4.8376 -4.9429 0.4700 18 16 4.3491 -3.5595 1.4411 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 4.1235 -2.9313 -2.0837 23 1 5.8213 -7.7295 -0.9496 24 1 5.5031 -6.8231 1.4732 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259979735.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = 41.491241 kcal Electronic energy + Delta-G solvation = -10667.653455 eV Core-core repulsion = 8672.275274 eV Total energy + Delta-G solvation = -1995.378180 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.90343 -37.07417 -34.82990 -32.10137 -31.44676 -27.83381 -24.87995 -22.99524 -21.55095 -20.21121 -19.12058 -18.99629 -16.41227 -16.25229 -15.56867 -15.43163 -15.11190 -14.46015 -14.11437 -13.77214 -13.33341 -12.92762 -12.63942 -12.39989 -12.06371 -11.77825 -11.56807 -11.51805 -10.79471 -10.39868 -8.78286 -8.46776 -8.30412 -6.37055 0.29289 0.76744 1.33642 1.37370 1.40050 1.51552 1.83862 1.96802 2.32513 2.35101 3.03585 4.06392 4.27626 4.32211 4.62675 4.72422 4.89626 4.97561 5.10777 5.32669 5.47904 5.54648 5.77520 5.99900 6.23518 6.67785 6.79051 7.25988 8.85938 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.064264 B = 0.008208 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.598534 B = 3410.422422 C = 3490.754417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.524 4.524 8 H 0.027 0.973 9 C 0.054 3.946 10 C -0.129 4.129 11 C -0.141 4.141 12 C 0.020 3.980 13 N -0.552 5.552 14 H 0.430 0.570 15 C 0.059 3.941 16 C -0.194 4.194 17 C -0.236 4.236 18 S 0.087 5.913 19 H 0.269 0.731 20 H 0.035 0.965 21 H 0.047 0.953 22 H 0.139 0.861 23 H 0.225 0.775 24 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.387 -10.568 -2.423 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.562 4.562 8 H 0.046 0.954 9 C 0.015 3.985 10 C -0.247 4.247 11 C -0.172 4.172 12 C -0.095 4.095 13 N -0.154 5.154 14 H 0.270 0.730 15 C -0.073 4.073 16 C -0.223 4.223 17 C -0.357 4.357 18 S 0.347 5.653 19 H 0.078 0.922 20 H 0.053 0.947 21 H 0.065 0.935 22 H 0.156 0.844 23 H 0.241 0.759 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.145 -10.184 -1.071 16.663 hybrid contribution -0.349 0.544 -1.824 1.935 sum 12.796 -9.639 -2.895 16.280 Atomic orbital electron populations 1.70054 1.08319 1.28382 1.51907 1.25970 0.95654 1.03383 0.93755 0.85658 0.79551 0.77947 0.79588 1.18601 1.20656 1.16833 1.21125 0.90462 0.93202 1.51422 0.95419 1.18205 0.94351 0.87751 0.98222 1.24107 1.04043 1.01395 0.95117 1.18862 1.06870 0.91690 0.99800 1.18278 1.09416 0.91046 0.90800 1.41964 1.54980 1.09126 1.09332 0.72999 1.22501 1.02342 0.95132 0.87311 1.20457 1.11048 0.91700 0.99105 1.23248 1.14799 1.01491 0.96191 1.83598 1.69249 1.03913 1.08587 0.92232 0.94703 0.93524 0.84359 0.75866 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.44 0.30 -59.45 14 2 C 0.01 0.58 5.47 84.65 0.46 1.04 14 3 Si 0.95 43.75 27.47 68.60 1.88 45.64 14 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 14 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 14 6 H -0.24 -10.46 6.54 99.48 0.65 -9.81 14 7 C -0.52 -30.99 9.65 25.60 0.25 -30.74 14 8 H 0.03 1.84 7.98 -2.91 -0.02 1.82 14 9 C 0.05 2.63 4.51 29.10 0.13 2.76 14 10 C -0.13 -5.79 5.64 24.53 0.14 -5.65 14 11 C -0.14 -5.66 10.02 21.57 0.22 -5.44 14 12 C 0.02 0.71 7.71 38.22 0.29 1.00 14 13 N -0.55 -13.34 6.21 -188.03 -1.17 -14.51 14 14 H 0.43 7.24 8.96 -92.71 -0.83 6.41 14 15 C 0.06 1.19 11.87 83.06 0.99 2.17 14 16 C -0.19 -5.25 10.85 22.27 0.24 -5.01 14 17 C -0.24 -8.53 7.32 23.00 0.17 -8.37 14 18 S 0.09 3.51 23.29 -56.49 -1.32 2.19 14 19 H 0.27 15.71 8.31 -92.71 -0.77 14.93 14 20 H 0.03 1.66 7.20 -2.39 -0.02 1.65 14 21 H 0.05 2.14 7.57 -2.39 -0.02 2.13 14 22 H 0.14 5.16 8.06 -2.91 -0.02 5.14 14 23 H 0.22 1.93 8.06 -2.91 -0.02 1.91 14 24 H 0.16 3.48 8.06 -2.91 -0.02 3.46 14 Total: -1.00 -72.30 228.90 2.92 -69.38 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.33 Total: 4.98 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 2.89 Total: -48.23 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -0.87 Total: -73.96 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.32 Total: 2.19 kcal Total: -72.30 2.92 -69.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259979735.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.871 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds