Wall clock time and date at job start Mon Mar 30 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40888 * 120.96868 * 2 1 4 4 C 1.41452 * 120.59631 * 0.24844 * 3 2 1 5 5 H 1.08001 * 120.00112 * 27.57096 * 4 3 2 6 6 C 1.39939 * 120.00220 * 207.58032 * 4 3 2 7 7 N 1.30829 * 119.99827 * 12.30180 * 6 4 3 8 8 Si 1.86798 * 120.00146 * 192.31089 * 6 4 3 9 9 H 1.48500 * 109.47283 * 59.99484 * 8 6 4 10 10 H 1.48503 * 109.46954 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47195 * 299.99301 * 8 6 4 12 12 C 1.40771 * 118.80917 * 180.29124 * 3 2 1 13 13 N 1.31566 * 120.72890 * 359.97438 * 12 3 2 14 14 C 1.31846 * 122.16505 * 0.02562 * 13 12 3 15 15 C 1.39474 * 120.97088 * 180.27292 * 2 1 3 16 16 C 1.47765 * 120.44249 * 359.71380 * 15 2 1 17 17 O 1.21461 * 119.99819 * 354.17674 * 16 15 2 18 18 O 1.34700 * 120.00005 * 174.17709 * 16 15 2 19 19 H 1.08994 * 109.47792 * 262.91246 * 1 2 3 20 20 H 1.08999 * 109.47556 * 22.92123 * 1 2 3 21 21 H 1.09005 * 109.46763 * 142.91511 * 1 2 3 22 22 H 0.97001 * 120.00010 * 180.02562 * 7 6 4 23 23 H 1.07997 * 119.63223 * 179.97438 * 12 3 2 24 24 H 1.08002 * 119.43564 * 179.97438 * 14 13 12 25 25 H 0.96698 * 117.00258 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2319 1.2080 0.0000 4 6 1.5584 2.4519 0.0053 5 1 0.5738 2.5310 0.4420 6 6 2.1677 3.5800 -0.5556 7 7 3.2404 3.4457 -1.2924 8 14 1.4496 5.2775 -0.2520 9 1 1.4452 5.5596 1.2060 10 1 2.2744 6.2959 -0.9504 11 1 0.0588 5.3264 -0.7698 12 6 3.6386 1.1550 -0.0063 13 7 4.2678 -0.0005 -0.0115 14 6 3.6233 -1.1506 -0.0117 15 6 2.2247 -1.1959 -0.0057 16 6 1.5177 -2.4934 -0.0055 17 8 0.3087 -2.5262 0.1063 18 8 2.2140 -3.6398 -0.1294 19 1 -0.3634 -0.1268 1.0197 20 1 -0.3634 0.9465 -0.4002 21 1 -0.3633 -0.8199 -0.6197 22 1 3.6630 4.2276 -1.6809 23 1 4.2076 2.0729 -0.0068 24 1 4.1843 -2.0735 -0.0166 25 1 1.7078 -4.4637 -0.1235 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037769.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:09 Heat of formation + Delta-G solvation = -95.006588 kcal Electronic energy + Delta-G solvation = -13058.220542 eV Core-core repulsion = 10614.170501 eV Total energy + Delta-G solvation = -2444.050041 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.41032 -39.90465 -37.08552 -35.97144 -34.26722 -32.04517 -28.98859 -27.34288 -25.25978 -22.82395 -21.94879 -19.57533 -18.85013 -17.76633 -16.87148 -16.77363 -16.56456 -16.35373 -14.96106 -14.58983 -14.27742 -13.58961 -13.49128 -13.25041 -13.21889 -12.89646 -12.75086 -12.63751 -12.43936 -12.04157 -11.23219 -11.13996 -10.17473 -10.00186 -9.60219 -8.75143 -6.49913 -0.02017 0.78149 1.42401 1.51001 1.54940 1.78163 2.17229 2.25140 2.70913 3.53680 4.06774 4.23470 4.34610 4.43642 4.78199 4.92911 4.94944 5.09474 5.15743 5.25054 5.58946 5.67281 5.71453 5.98719 6.29312 6.60720 6.73939 7.10012 7.58801 8.24217 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.051186 B = 0.009986 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.892936 B = 2803.302738 C = 3274.008862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.111 4.111 3 C 0.027 3.973 4 C -0.468 4.468 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.824 5.824 8 Si 0.991 3.009 9 H -0.258 1.258 10 H -0.268 1.268 11 H -0.258 1.258 12 C 0.048 3.952 13 N -0.501 5.501 14 C 0.019 3.981 15 C -0.169 4.169 16 C 0.541 3.459 17 O -0.538 6.538 18 O -0.502 6.502 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.295 0.705 23 H 0.146 0.854 24 H 0.162 0.838 25 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -3.515 1.259 4.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.023 3.977 4 C -0.497 4.497 5 H 0.110 0.890 6 C -0.181 4.181 7 N -0.450 5.450 8 Si 0.811 3.189 9 H -0.182 1.182 10 H -0.193 1.193 11 H -0.182 1.182 12 C -0.112 4.112 13 N -0.209 5.209 14 C -0.138 4.138 15 C -0.172 4.172 16 C 0.388 3.612 17 O -0.430 6.430 18 O -0.315 6.315 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.163 0.837 24 H 0.179 0.821 25 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -1.769 -3.075 1.124 3.722 hybrid contribution -1.209 0.131 -0.063 1.218 sum -2.978 -2.944 1.061 4.320 Atomic orbital electron populations 1.20606 0.89903 1.01966 1.01608 1.20743 0.97016 0.91283 1.02842 1.18681 0.93337 0.93409 0.92264 1.19784 1.03823 0.92416 1.33722 0.89005 1.26863 0.94403 1.05322 0.91549 1.69757 1.18060 1.34605 1.22537 0.85089 0.79151 0.74802 0.79810 1.18190 1.19255 1.18217 1.23187 0.92609 0.94470 1.00960 1.67228 1.42042 0.99063 1.12577 1.22583 0.90019 0.96119 1.05076 1.19806 0.95391 0.90306 1.11688 1.20733 0.84601 0.84608 0.71301 1.90768 1.16072 1.88123 1.48062 1.84555 1.44956 1.17265 1.84763 0.92018 0.91938 0.91034 0.89386 0.83690 0.82082 0.70907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.61 8.40 71.24 0.60 -3.01 15 2 C -0.11 -5.38 6.01 -18.92 -0.11 -5.49 15 3 C 0.03 1.43 5.56 -21.22 -0.12 1.32 15 4 C -0.47 -23.38 8.16 23.47 0.19 -23.19 15 5 H 0.09 4.33 6.89 -2.91 -0.02 4.31 15 6 C 0.03 1.61 5.24 85.25 0.45 2.06 15 7 N -0.82 -40.64 10.86 21.83 0.24 -40.40 15 8 Si 0.99 35.37 29.58 68.60 2.03 37.40 15 9 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 10 H -0.27 -9.13 7.11 99.48 0.71 -8.43 15 11 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 12 C 0.05 2.56 9.86 85.35 0.84 3.41 15 13 N -0.50 -25.21 10.32 -192.61 -1.99 -27.20 15 14 C 0.02 0.87 10.78 85.10 0.92 1.79 15 15 C -0.17 -7.54 5.88 -20.05 -0.12 -7.66 15 16 C 0.54 20.36 8.22 70.34 0.58 20.94 15 17 O -0.54 -21.50 14.28 19.96 0.29 -21.21 15 18 O -0.50 -13.96 12.71 -56.10 -0.71 -14.67 15 19 H 0.06 2.50 8.14 -2.39 -0.02 2.48 15 20 H 0.06 2.62 6.58 -2.39 -0.02 2.60 15 21 H 0.07 2.99 6.00 -2.38 -0.01 2.98 15 22 H 0.30 13.13 8.30 -92.71 -0.77 12.36 15 23 H 0.15 7.87 6.18 -2.91 -0.02 7.85 15 24 H 0.16 6.22 7.62 -2.91 -0.02 6.20 15 25 H 0.43 6.85 9.11 -74.06 -0.67 6.18 15 Total: -1.00 -59.55 226.01 3.64 -55.91 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.57 Total: 20.03 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.22 Total: -9.85 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -1.75 Total: -67.60 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.43 Total: -35.89 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Total: -59.55 3.64 -55.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037769.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.099 kcal (2) G-P(sol) polarization free energy of solvation -59.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds