Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99673 * 3 2 1 5 5 H 1.48501 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47138 * 119.99496 * 3 2 1 7 7 C 1.37866 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47086 * 60.00288 * 9 7 2 11 11 N 1.46899 * 109.47041 * 299.99823 * 9 7 2 12 12 C 1.50703 * 109.46947 * 179.97438 * 9 7 2 13 13 C 1.34675 * 125.84157 * 125.00198 * 12 9 7 14 14 N 1.37214 * 106.91103 * 180.02562 * 13 12 9 15 15 C 1.38775 * 145.44690 * 179.97438 * 14 13 12 16 16 C 1.32667 * 107.71935 * 180.02562 * 15 14 13 17 17 O 1.35242 * 108.81299 * 359.96495 * 16 15 14 18 18 C 1.35047 * 108.72694 * 0.05434 * 17 16 15 19 19 N 1.31488 * 144.36685 * 179.97438 * 18 17 16 20 20 H 0.97007 * 120.00246 * 0.02562 * 1 2 3 21 21 H 1.00900 * 110.99684 * 176.04535 * 11 9 7 22 22 H 1.00898 * 111.00202 * 300.00007 * 11 9 7 23 23 H 1.07999 * 126.54492 * 359.75885 * 13 12 9 24 24 H 1.08002 * 126.13695 * 0.02562 * 15 14 13 25 25 H 1.07998 * 125.59354 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8897 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.2670 -4.6508 0.8948 14 7 3.3049 -5.4710 0.5305 15 6 4.0110 -6.6257 0.8370 16 6 4.9685 -6.7664 -0.0704 17 8 4.8942 -5.7382 -0.9458 18 6 3.8720 -4.9333 -0.5836 19 7 3.2155 -3.8361 -0.8900 20 1 -0.4851 0.8401 -0.0004 21 1 -0.1578 -3.4133 1.1911 22 1 0.9637 -2.5251 2.0390 23 1 1.6081 -4.7842 1.7401 24 1 3.8159 -7.2905 1.6656 25 1 5.6885 -7.5706 -0.1050 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061868.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = 107.680314 kcal Electronic energy + Delta-G solvation = -13036.409228 eV Core-core repulsion = 10633.441101 eV Total energy + Delta-G solvation = -2402.968127 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.59041 -39.56621 -34.77550 -33.59848 -31.40367 -29.49986 -27.99099 -26.06608 -23.16520 -21.92324 -21.60267 -19.54184 -17.09563 -16.94040 -16.31110 -15.86771 -15.28997 -14.46211 -14.15925 -13.45869 -13.29957 -13.01736 -12.76565 -12.12442 -11.56805 -10.98683 -10.69411 -10.62142 -9.87600 -9.38620 -9.16359 -8.36988 -8.19301 -7.70005 -7.24339 -5.77275 -3.88840 1.52390 2.29443 2.55612 2.93276 3.45812 3.48773 3.52185 3.66415 4.53677 4.61214 4.72034 5.19514 5.26153 5.45951 5.79282 5.96563 6.26500 6.38139 6.50398 7.29173 7.44413 7.59609 8.05182 8.20180 8.42738 8.73910 9.00807 9.21710 9.77688 11.27824 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055688 B = 0.008729 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.679418 B = 3206.892351 C = 3539.411577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.294 3.706 10 H 0.060 0.940 11 N -0.802 5.802 12 C 0.080 3.920 13 C -0.105 4.105 14 N -0.439 5.439 15 C -0.036 4.036 16 C -0.025 4.025 17 O -0.176 6.176 18 C 0.321 3.679 19 N -0.442 5.442 20 H 0.255 0.745 21 H 0.299 0.701 22 H 0.320 0.680 23 H 0.173 0.827 24 H 0.188 0.812 25 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 -13.700 3.226 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.183 3.817 10 H 0.078 0.922 11 N -0.328 5.328 12 C -0.050 4.050 13 C -0.231 4.231 14 N -0.128 5.128 15 C -0.153 4.153 16 C -0.093 4.093 17 O -0.071 6.071 18 C 0.028 3.972 19 N -0.178 5.178 20 H 0.065 0.935 21 H 0.109 0.891 22 H 0.132 0.868 23 H 0.190 0.810 24 H 0.205 0.795 25 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.215 -12.460 2.248 14.104 hybrid contribution 0.994 -0.817 1.165 1.735 sum 7.209 -13.277 3.413 15.489 Atomic orbital electron populations 1.70089 1.05606 1.25749 1.47323 1.24921 0.94661 0.98525 0.94356 0.86764 0.79652 0.83498 0.78546 1.20281 1.21456 1.20513 1.20725 0.92428 0.88984 1.53493 0.92554 1.17722 0.85969 0.86999 0.91041 0.92222 1.59306 1.27431 1.41754 1.04310 1.23508 0.95389 0.96933 0.89213 1.21798 0.97573 0.95802 1.07879 1.44440 1.25276 1.18845 1.24244 1.22140 0.96458 0.92246 1.04473 1.23895 1.02056 0.93179 0.90173 1.84595 1.43217 1.31800 1.47520 1.22907 0.91504 0.94382 0.88373 1.70590 1.08664 1.09504 1.28995 0.93471 0.89064 0.86789 0.80983 0.79483 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.10 12.77 55.43 0.71 -24.39 15 2 C 0.08 2.33 5.39 -17.82 -0.10 2.23 15 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 15 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.52 -14.83 8.69 -34.44 -0.30 -15.13 15 8 H 0.06 1.67 7.74 -52.48 -0.41 1.27 15 9 C 0.29 7.56 3.16 -70.01 -0.22 7.34 15 10 H 0.06 1.69 8.14 -51.93 -0.42 1.27 15 11 N -0.80 -18.42 7.98 -6.65 -0.05 -18.48 15 12 C 0.08 1.86 6.23 -82.83 -0.52 1.35 15 13 C -0.11 -2.02 11.03 -16.40 -0.18 -2.20 15 14 N -0.44 -7.79 3.57 -64.78 -0.23 -8.02 15 15 C -0.04 -0.43 11.95 -16.30 -0.19 -0.63 15 16 C -0.03 -0.27 12.01 28.84 0.35 0.07 15 17 O -0.18 -2.91 10.77 0.96 0.01 -2.90 15 18 C 0.32 6.57 9.78 -88.59 -0.87 5.70 15 19 N -0.44 -10.68 11.26 -10.88 -0.12 -10.80 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.30 5.91 8.66 -39.29 -0.34 5.57 15 22 H 0.32 6.99 8.73 -39.29 -0.34 6.64 15 23 H 0.17 2.78 7.58 -52.49 -0.40 2.38 15 24 H 0.19 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.23 1.05 8.06 -52.49 -0.42 0.63 15 LS Contribution 230.72 15.07 3.48 3.48 Total: -1.00 -34.20 230.72 -5.15 -39.35 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -1.89 Total: 5.95 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.03 Total: -1.27 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.30 Total: -61.69 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.01 Total: -2.90 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -34.20 -5.15 -39.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061868.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.031 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds