Wall clock time and date at job start Mon Mar 30 2020 02:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99673 * 3 2 1 5 5 H 1.48501 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47138 * 119.99496 * 3 2 1 7 7 C 1.37866 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47086 * 60.00288 * 9 7 2 11 11 N 1.46899 * 109.47041 * 299.99823 * 9 7 2 12 12 C 1.50703 * 109.46947 * 179.97438 * 9 7 2 13 13 C 1.34675 * 125.84157 * 125.00198 * 12 9 7 14 14 N 1.37214 * 106.91103 * 180.02562 * 13 12 9 15 15 C 1.38775 * 145.44690 * 179.97438 * 14 13 12 16 16 C 1.32667 * 107.71935 * 180.02562 * 15 14 13 17 17 O 1.35242 * 108.81299 * 359.96495 * 16 15 14 18 18 C 1.35047 * 108.72694 * 0.05434 * 17 16 15 19 19 N 1.31488 * 144.36685 * 179.97438 * 18 17 16 20 20 H 0.97007 * 120.00246 * 0.02562 * 1 2 3 21 21 H 1.00900 * 110.99684 * 176.04535 * 11 9 7 22 22 H 1.00898 * 111.00202 * 300.00007 * 11 9 7 23 23 H 1.07999 * 126.54492 * 359.75885 * 13 12 9 24 24 H 1.08002 * 126.13695 * 0.02562 * 15 14 13 25 25 H 1.07998 * 125.59354 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8897 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.2670 -4.6508 0.8948 14 7 3.3049 -5.4710 0.5305 15 6 4.0110 -6.6257 0.8370 16 6 4.9685 -6.7664 -0.0704 17 8 4.8942 -5.7382 -0.9458 18 6 3.8720 -4.9333 -0.5836 19 7 3.2155 -3.8361 -0.8900 20 1 -0.4851 0.8401 -0.0004 21 1 -0.1578 -3.4133 1.1911 22 1 0.9637 -2.5251 2.0390 23 1 1.6081 -4.7842 1.7401 24 1 3.8159 -7.2905 1.6656 25 1 5.6885 -7.5706 -0.1050 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061868.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:48 Heat of formation + Delta-G solvation = 79.381455 kcal Electronic energy + Delta-G solvation = -13037.636359 eV Core-core repulsion = 10633.441101 eV Total energy + Delta-G solvation = -2404.195257 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.90441 -40.97740 -36.54251 -35.08531 -33.47935 -30.75064 -29.52648 -28.07858 -24.87687 -23.22519 -22.97517 -21.20960 -18.61828 -18.33930 -18.06905 -17.23331 -16.72775 -16.30973 -15.96231 -14.79502 -14.70524 -14.55083 -14.14040 -14.02266 -13.40475 -12.76659 -12.66915 -12.37405 -11.90669 -11.29726 -10.96316 -10.51782 -9.50066 -9.25849 -9.06103 -7.94278 -6.12896 0.43955 1.02501 1.25804 1.44927 1.47452 1.54738 1.76179 2.00990 2.52964 3.28436 3.39885 3.73726 4.06004 4.22092 4.39773 4.57781 4.80842 4.86481 5.12659 5.41702 5.75060 5.81356 6.17175 6.34223 6.61739 6.97367 7.11541 7.28040 7.57000 9.09482 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055688 B = 0.008729 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.679418 B = 3206.892351 C = 3539.411577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.036 0.964 9 C 0.303 3.697 10 H 0.017 0.983 11 N -0.806 5.806 12 C 0.037 3.963 13 C -0.079 4.079 14 N -0.435 5.435 15 C -0.055 4.055 16 C 0.000 4.000 17 O -0.189 6.189 18 C 0.299 3.701 19 N -0.503 5.503 20 H 0.257 0.743 21 H 0.319 0.681 22 H 0.328 0.672 23 H 0.205 0.795 24 H 0.237 0.763 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -15.753 4.673 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.191 3.809 10 H 0.034 0.966 11 N -0.333 5.333 12 C -0.094 4.094 13 C -0.206 4.206 14 N -0.123 5.123 15 C -0.169 4.169 16 C -0.065 4.065 17 O -0.084 6.084 18 C 0.005 3.995 19 N -0.239 5.239 20 H 0.066 0.934 21 H 0.131 0.869 22 H 0.141 0.859 23 H 0.221 0.779 24 H 0.253 0.747 25 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 7.583 -14.557 3.702 16.826 hybrid contribution 0.697 -0.393 0.697 1.062 sum 8.280 -14.950 4.399 17.647 Atomic orbital electron populations 1.70193 1.06706 1.26496 1.48096 1.25601 0.95521 1.01519 0.94047 0.85803 0.78535 0.79835 0.78385 1.20582 1.20371 1.19882 1.20924 0.91691 0.91045 1.53638 0.94614 1.17155 0.86049 0.87362 0.90323 0.96553 1.59008 1.27483 1.43244 1.03612 1.22933 0.96473 0.98300 0.91675 1.21977 0.97344 0.94372 1.06911 1.44600 1.24485 1.20006 1.23212 1.23127 0.96087 0.91088 1.06604 1.25349 1.01838 0.91780 0.87506 1.84635 1.41950 1.32695 1.49116 1.22757 0.92674 0.94527 0.89520 1.70233 1.10272 1.12461 1.30927 0.93403 0.86930 0.85924 0.77876 0.74707 0.69452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.80 12.77 21.44 0.27 -52.53 15 2 C 0.04 2.13 5.39 84.65 0.46 2.59 15 3 Si 0.95 46.26 29.54 68.60 2.03 48.28 15 4 H -0.28 -13.67 7.11 99.48 0.71 -12.96 15 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 6 H -0.27 -12.98 7.11 99.48 0.71 -12.27 15 7 C -0.53 -31.80 8.69 25.60 0.22 -31.58 15 8 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15 9 C 0.30 16.24 3.16 43.43 0.14 16.37 15 10 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 11 N -0.81 -37.48 7.98 -174.95 -1.40 -38.88 15 12 C 0.04 1.75 6.23 41.39 0.26 2.01 15 13 C -0.08 -2.94 11.03 83.03 0.92 -2.03 15 14 N -0.43 -14.49 3.57 -470.04 -1.68 -16.17 15 15 C -0.05 -1.07 11.95 82.43 0.99 -0.08 15 16 C 0.00 0.00 12.01 66.65 0.80 0.80 15 17 O -0.19 -5.85 10.77 -19.48 -0.21 -6.06 15 18 C 0.30 12.15 9.78 179.64 1.76 13.90 15 19 N -0.50 -25.21 11.26 -301.92 -3.40 -28.61 15 20 H 0.26 14.69 8.31 -92.70 -0.77 13.91 15 21 H 0.32 12.56 8.66 -89.69 -0.78 11.78 15 22 H 0.33 14.29 8.73 -89.70 -0.78 13.50 15 23 H 0.20 6.06 7.58 -2.91 -0.02 6.03 15 24 H 0.24 2.08 8.06 -2.91 -0.02 2.06 15 25 H 0.29 0.62 8.06 -2.91 -0.02 0.59 15 Total: -1.00 -79.27 230.72 0.83 -78.44 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.32 Total: 13.53 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.53 Total: 1.99 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -6.20 Total: -136.18 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.21 Total: -6.06 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -79.27 0.83 -78.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061868.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.820 kcal (2) G-P(sol) polarization free energy of solvation -79.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds