Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.34667 * 125.84542 * 124.71851 * 12 9 7 14 14 N 1.37216 * 106.91288 * 179.84744 * 13 12 9 15 15 C 1.38775 * 145.44837 * 179.97438 * 14 13 12 16 16 C 1.32675 * 107.71589 * 180.42739 * 15 14 13 17 17 O 1.35225 * 108.81591 * 359.97438 * 16 15 14 18 18 C 1.35057 * 108.72949 * 0.02562 * 17 16 15 19 19 N 1.31486 * 144.36530 * 180.02562 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 22 22 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 23 23 H 1.08005 * 126.54358 * 359.97438 * 13 12 9 24 24 H 1.08001 * 126.14151 * 0.43156 * 15 14 13 25 25 H 1.08002 * 125.58808 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.2701 -4.6481 0.8978 14 7 3.3040 -5.4717 0.5299 15 6 4.0095 -6.6269 0.8359 16 6 4.9667 -6.7678 -0.0719 17 8 4.8930 -5.7393 -0.9468 18 6 3.8710 -4.9342 -0.5844 19 7 3.2145 -3.8369 -0.8908 20 1 -0.4850 0.8401 0.0004 21 1 0.9651 -2.5260 -2.0381 22 1 -0.1572 -3.4138 -1.1907 23 1 1.6123 -4.7805 1.7442 24 1 3.8144 -7.2919 1.6642 25 1 5.6868 -7.5721 -0.1065 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061885.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = 105.699044 kcal Electronic energy + Delta-G solvation = -13026.130487 eV Core-core repulsion = 10623.076446 eV Total energy + Delta-G solvation = -2403.054041 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.58373 -39.54349 -34.72565 -33.47498 -31.23426 -29.39375 -28.40833 -25.87130 -23.18033 -21.81416 -21.60799 -19.59538 -17.19596 -16.88498 -16.33718 -15.74736 -15.17847 -14.36765 -13.94580 -13.41835 -13.36851 -13.01461 -12.65143 -12.31636 -11.25063 -11.13780 -10.71373 -10.59477 -9.86068 -9.52441 -9.01783 -8.30898 -8.28075 -7.77181 -7.01761 -5.76624 -3.87602 1.52578 2.29719 2.56841 2.94259 3.44312 3.50080 3.53586 3.65010 4.54437 4.61944 4.72680 5.22160 5.27201 5.49900 5.81053 6.05655 6.33869 6.46210 6.53425 7.28007 7.36775 7.66188 8.07149 8.27570 8.47217 8.74960 9.14855 9.26804 9.78993 11.28724 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055965 B = 0.008583 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.194382 B = 3261.476568 C = 3482.461748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.081 3.919 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.296 3.704 10 H 0.056 0.944 11 N -0.802 5.802 12 C 0.071 3.929 13 C -0.091 4.091 14 N -0.441 5.441 15 C -0.036 4.036 16 C -0.025 4.025 17 O -0.177 6.177 18 C 0.318 3.682 19 N -0.442 5.442 20 H 0.255 0.745 21 H 0.326 0.674 22 H 0.295 0.705 23 H 0.177 0.823 24 H 0.188 0.812 25 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -13.827 2.456 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.185 3.815 10 H 0.074 0.926 11 N -0.327 5.327 12 C -0.059 4.059 13 C -0.218 4.218 14 N -0.129 5.129 15 C -0.153 4.153 16 C -0.093 4.093 17 O -0.072 6.072 18 C 0.025 3.975 19 N -0.177 5.177 20 H 0.064 0.936 21 H 0.138 0.862 22 H 0.105 0.895 23 H 0.194 0.806 24 H 0.205 0.795 25 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.207 -12.577 2.007 14.168 hybrid contribution 1.010 -0.806 0.674 1.457 sum 7.217 -13.383 2.681 15.440 Atomic orbital electron populations 1.70099 1.05601 1.25586 1.47527 1.24925 0.94643 0.98498 0.94410 0.86715 0.79882 0.83913 0.78056 1.20714 1.21459 1.20157 1.20827 0.92515 0.89213 1.53235 0.92553 1.17796 0.85480 0.86915 0.91293 0.92601 1.59289 1.27522 1.41172 1.04694 1.23474 0.95488 0.97483 0.89491 1.22116 0.97108 0.95231 1.07296 1.44521 1.25509 1.18743 1.24163 1.22153 0.96478 0.92244 1.04444 1.23897 1.02036 0.93137 0.90236 1.84588 1.43261 1.31782 1.47559 1.22829 0.91663 0.94440 0.88519 1.70547 1.08499 1.09360 1.29329 0.93563 0.86156 0.89504 0.80609 0.79464 0.75788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.16 12.77 55.43 0.71 -24.45 15 2 C 0.08 2.33 5.39 -17.82 -0.10 2.23 15 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 15 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.52 -14.89 8.69 -34.44 -0.30 -15.19 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 9 C 0.30 7.60 3.09 -70.02 -0.22 7.38 15 10 H 0.06 1.49 8.11 -51.93 -0.42 1.07 15 11 N -0.80 -19.78 8.53 -6.65 -0.06 -19.83 15 12 C 0.07 1.63 5.82 -82.83 -0.48 1.15 15 13 C -0.09 -1.77 11.92 -16.41 -0.20 -1.96 15 14 N -0.44 -7.78 3.57 -64.77 -0.23 -8.01 15 15 C -0.04 -0.43 11.95 -16.30 -0.19 -0.63 15 16 C -0.03 -0.27 12.01 28.84 0.35 0.07 15 17 O -0.18 -2.90 10.77 0.99 0.01 -2.89 15 18 C 0.32 6.44 9.78 -88.59 -0.87 5.57 15 19 N -0.44 -10.43 11.26 -10.87 -0.12 -10.55 15 20 H 0.25 7.18 8.31 -40.82 -0.34 6.85 15 21 H 0.33 8.12 8.98 -39.29 -0.35 7.77 15 22 H 0.30 6.44 9.06 -39.29 -0.36 6.08 15 23 H 0.18 2.87 8.06 -52.48 -0.42 2.45 15 24 H 0.19 1.42 8.06 -52.49 -0.42 0.99 15 25 H 0.23 1.05 8.06 -52.49 -0.42 0.62 15 LS Contribution 232.79 15.07 3.51 3.51 Total: -1.00 -34.02 232.79 -5.15 -39.17 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -1.94 Total: 7.32 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.00 Total: -1.38 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.30 Total: -62.85 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.01 Total: -2.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -34.02 -5.15 -39.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061885.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.866 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds