Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.34667 * 125.84542 * 124.71851 * 12 9 7 14 14 N 1.37216 * 106.91288 * 179.84744 * 13 12 9 15 15 C 1.38775 * 145.44837 * 179.97438 * 14 13 12 16 16 C 1.32675 * 107.71589 * 180.42739 * 15 14 13 17 17 O 1.35225 * 108.81591 * 359.97438 * 16 15 14 18 18 C 1.35057 * 108.72949 * 0.02562 * 17 16 15 19 19 N 1.31486 * 144.36530 * 180.02562 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 22 22 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 23 23 H 1.08005 * 126.54358 * 359.97438 * 13 12 9 24 24 H 1.08001 * 126.14151 * 0.43156 * 15 14 13 25 25 H 1.08002 * 125.58808 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.2701 -4.6481 0.8978 14 7 3.3040 -5.4717 0.5299 15 6 4.0095 -6.6269 0.8359 16 6 4.9667 -6.7678 -0.0719 17 8 4.8930 -5.7393 -0.9468 18 6 3.8710 -4.9342 -0.5844 19 7 3.2145 -3.8369 -0.8908 20 1 -0.4850 0.8401 0.0004 21 1 0.9651 -2.5260 -2.0381 22 1 -0.1572 -3.4138 -1.1907 23 1 1.6123 -4.7805 1.7442 24 1 3.8144 -7.2919 1.6642 25 1 5.6868 -7.5721 -0.1065 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061885.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = 77.786327 kcal Electronic energy + Delta-G solvation = -13027.340874 eV Core-core repulsion = 10623.076446 eV Total energy + Delta-G solvation = -2404.264427 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.88468 -40.93946 -36.47798 -35.00986 -33.30162 -30.66910 -29.93651 -27.90898 -24.84049 -23.07020 -23.01520 -21.29230 -18.68876 -18.22985 -18.03886 -17.16464 -16.72586 -16.07148 -15.88378 -14.90340 -14.69303 -14.40760 -14.23336 -14.04868 -13.24300 -12.78569 -12.70331 -12.40996 -11.87979 -11.29958 -10.95311 -10.49433 -9.58636 -9.28264 -8.89565 -7.94428 -6.11866 0.45228 1.03767 1.27524 1.44475 1.46521 1.55742 1.77668 2.02091 2.52820 3.29953 3.43211 3.74637 4.08161 4.27276 4.50259 4.62098 4.78248 4.87253 5.15678 5.41610 5.77186 5.83023 6.21108 6.33893 6.67045 6.94387 7.08255 7.31226 7.57828 9.09994 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055965 B = 0.008583 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.194382 B = 3261.476568 C = 3482.461748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.035 0.965 9 C 0.301 3.699 10 H 0.040 0.960 11 N -0.809 5.809 12 C 0.033 3.967 13 C -0.074 4.074 14 N -0.436 5.436 15 C -0.056 4.056 16 C 0.000 4.000 17 O -0.189 6.189 18 C 0.297 3.703 19 N -0.494 5.494 20 H 0.256 0.744 21 H 0.322 0.678 22 H 0.310 0.690 23 H 0.205 0.795 24 H 0.235 0.765 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 -15.772 3.333 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.773 3.227 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.190 3.810 10 H 0.057 0.943 11 N -0.335 5.335 12 C -0.097 4.097 13 C -0.203 4.203 14 N -0.124 5.124 15 C -0.170 4.170 16 C -0.065 4.065 17 O -0.084 6.084 18 C 0.003 3.997 19 N -0.230 5.230 20 H 0.066 0.934 21 H 0.133 0.867 22 H 0.121 0.879 23 H 0.221 0.779 24 H 0.252 0.748 25 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 7.560 -14.565 2.892 16.663 hybrid contribution 0.717 -0.400 0.409 0.917 sum 8.277 -14.965 3.300 17.418 Atomic orbital electron populations 1.70194 1.06667 1.26375 1.48272 1.25591 0.95496 1.01454 0.94116 0.85763 0.78672 0.80280 0.77945 1.20654 1.20240 1.20188 1.21014 0.91729 0.91263 1.53346 0.94686 1.17386 0.85815 0.87159 0.90670 0.94264 1.59145 1.27780 1.42303 1.04229 1.22845 0.96542 0.98573 0.91789 1.22294 0.97147 0.94270 1.06569 1.44647 1.24691 1.19892 1.23200 1.23123 0.96160 0.91130 1.06570 1.25328 1.01802 0.91778 0.87586 1.84629 1.42011 1.32667 1.49120 1.22743 0.92762 0.94608 0.89569 1.70215 1.09836 1.12032 1.30916 0.93447 0.86709 0.87894 0.77851 0.74831 0.69526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.65 12.77 21.45 0.27 -52.38 15 2 C 0.04 2.14 5.39 84.66 0.46 2.60 15 3 Si 0.95 46.26 29.54 68.60 2.03 48.28 15 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 15 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 6 H -0.28 -13.39 7.11 99.48 0.71 -12.69 15 7 C -0.53 -31.67 8.69 25.60 0.22 -31.45 15 8 H 0.03 2.17 7.74 -2.91 -0.02 2.15 15 9 C 0.30 15.94 3.09 43.43 0.13 16.07 15 10 H 0.04 2.17 8.11 -2.39 -0.02 2.15 15 11 N -0.81 -41.17 8.53 -174.95 -1.49 -42.66 15 12 C 0.03 1.54 5.82 41.38 0.24 1.78 15 13 C -0.07 -2.83 11.92 83.03 0.99 -1.84 15 14 N -0.44 -14.52 3.57 -470.02 -1.68 -16.20 15 15 C -0.06 -1.09 11.95 82.42 0.99 -0.10 15 16 C 0.00 0.00 12.01 66.65 0.80 0.80 15 17 O -0.19 -5.79 10.77 -19.39 -0.21 -6.00 15 18 C 0.30 11.85 9.78 179.64 1.76 13.61 15 19 N -0.49 -23.92 11.26 -301.91 -3.40 -27.32 15 20 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 21 H 0.32 16.67 8.98 -89.69 -0.81 15.86 15 22 H 0.31 13.89 9.06 -89.70 -0.81 13.07 15 23 H 0.20 6.31 8.06 -2.91 -0.02 6.29 15 24 H 0.24 2.15 8.06 -2.91 -0.02 2.13 15 25 H 0.29 0.64 8.06 -2.91 -0.02 0.62 15 Total: -1.00 -77.23 232.79 0.73 -76.50 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.38 Total: 18.32 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.59 Total: 1.46 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -6.29 Total: -138.56 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.21 Total: -6.00 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.23 0.73 -76.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061885.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.285 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds