Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38610 * 120.95938 * 2 1 4 4 N 1.32157 * 120.08380 * 179.97438 * 3 2 1 5 5 N 1.28350 * 122.30965 * 359.97438 * 4 3 2 6 6 C 1.32854 * 122.01691 * 0.02562 * 5 4 3 7 7 C 1.47989 * 120.18960 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99970 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00274 * 359.97438 * 7 6 5 10 10 C 1.36784 * 120.00017 * 180.02562 * 9 7 6 11 11 H 1.08007 * 120.00294 * 359.97438 * 10 9 7 12 12 C 1.39105 * 119.99940 * 179.97438 * 10 9 7 13 13 N 1.31326 * 119.99982 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00141 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47162 * 89.99627 * 14 12 10 16 16 H 1.48495 * 109.47171 * 210.00296 * 14 12 10 17 17 H 1.48503 * 109.46848 * 330.00022 * 14 12 10 18 18 C 1.38772 * 120.96383 * 179.97438 * 2 1 3 19 19 H 1.08990 * 109.47144 * 270.02308 * 1 2 3 20 20 H 1.08999 * 109.46832 * 30.02429 * 1 2 3 21 21 H 1.09000 * 109.46761 * 150.01906 * 1 2 3 22 22 H 1.08006 * 119.96047 * 359.95228 * 3 2 1 23 23 H 0.96995 * 120.00019 * 359.97438 * 9 7 6 24 24 H 0.97003 * 119.99991 * 180.02562 * 13 12 10 25 25 H 1.08003 * 121.05048 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2201 1.1886 0.0000 4 7 3.5416 1.1684 0.0005 5 7 4.2109 0.0733 0.0015 6 6 3.6171 -1.1152 0.0016 7 6 4.4288 -2.3526 0.0022 8 8 3.8818 -3.4383 0.0018 9 7 5.7744 -2.2760 0.0021 10 6 6.5245 -3.4198 0.0021 11 1 6.0386 -4.3844 0.0026 12 6 7.9133 -3.3407 0.0015 13 7 8.6336 -4.4388 0.0010 14 14 8.7539 -1.6725 0.0000 15 1 8.9771 -1.2294 1.3996 16 1 10.0591 -1.7765 -0.7005 17 1 7.8935 -0.6854 -0.7005 18 6 2.2211 -1.1900 0.0005 19 1 -0.3633 0.0004 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5135 22 1 1.6952 2.1325 -0.0008 23 1 6.2108 -1.4098 0.0013 24 1 9.6020 -4.3837 0.0010 25 1 1.7143 -2.1437 0.0005 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241454.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = 17.047848 kcal Electronic energy + Delta-G solvation = -12724.076510 eV Core-core repulsion = 10317.178265 eV Total energy + Delta-G solvation = -2406.898245 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73532 -38.13560 -34.52009 -34.08742 -32.31317 -31.75208 -28.16179 -26.00261 -23.89607 -23.03554 -19.78648 -18.81120 -17.52242 -16.47700 -15.96616 -15.09973 -15.00277 -13.93526 -13.60320 -13.47747 -13.07447 -13.03640 -12.78106 -12.55960 -12.30029 -11.30850 -10.99760 -10.63694 -10.15921 -9.86728 -9.65202 -9.53709 -9.49986 -8.79726 -8.39179 -6.60246 -3.98502 0.83428 1.02985 3.00606 3.09648 3.12579 3.34725 3.95858 4.11859 4.21556 4.41322 4.63781 4.80486 4.96349 5.10579 5.11843 5.37493 5.53785 5.67520 5.73263 6.08858 6.16501 6.46456 7.31556 7.91351 8.34572 8.68240 8.91720 9.19184 9.65067 10.49274 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.053406 B = 0.008829 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.155574 B = 3170.482520 C = 3679.494732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C 0.024 3.976 4 N -0.241 5.241 5 N -0.246 5.246 6 C 0.064 3.936 7 C 0.470 3.530 8 O -0.581 6.581 9 N -0.538 5.538 10 C -0.294 4.294 11 H 0.128 0.872 12 C 0.048 3.952 13 N -0.850 5.850 14 Si 0.876 3.124 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.257 1.257 18 C -0.083 4.083 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.167 0.833 23 H 0.385 0.615 24 H 0.281 0.719 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 10.400 0.020 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.141 4.141 4 N -0.083 5.083 5 N -0.093 5.093 6 C -0.082 4.082 7 C 0.257 3.743 8 O -0.466 6.466 9 N -0.172 5.172 10 C -0.424 4.424 11 H 0.145 0.855 12 C -0.160 4.160 13 N -0.486 5.486 14 Si 0.701 3.299 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.181 1.181 18 C -0.113 4.113 19 H 0.098 0.902 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.184 0.816 23 H 0.220 0.780 24 H 0.092 0.908 25 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.803 10.389 0.017 14.283 hybrid contribution -0.549 0.418 -0.002 0.690 sum -10.351 10.806 0.015 14.964 Atomic orbital electron populations 1.20763 0.89156 1.03637 1.03121 1.21078 0.98226 0.93537 0.97623 1.24145 0.92684 0.98755 0.98560 1.72973 1.06921 1.20091 1.08324 1.73227 1.31372 0.94725 1.10002 1.23284 0.93608 0.95064 0.96199 1.16835 0.82258 0.86393 0.88846 1.90653 1.70892 1.27068 1.58012 1.42213 1.05498 1.09296 1.60212 1.19679 0.88710 0.87669 1.46371 0.85469 1.25211 0.96097 0.98316 0.96367 1.69587 1.07114 1.27558 1.44382 0.86649 0.80334 0.83019 0.79913 1.18834 1.19541 1.18114 1.22250 0.93735 0.99784 0.95580 0.90240 0.90730 0.90598 0.81612 0.77959 0.90787 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.07 36.01 0.36 -0.55 15 2 C -0.09 -1.23 5.92 -104.28 -0.62 -1.84 15 3 C 0.02 0.32 11.02 -17.27 -0.19 0.13 15 4 N -0.24 -4.29 11.51 30.59 0.35 -3.94 15 5 N -0.25 -5.03 10.75 33.31 0.36 -4.67 15 6 C 0.06 1.32 6.83 -82.84 -0.57 0.75 15 7 C 0.47 11.67 7.76 -12.26 -0.10 11.57 15 8 O -0.58 -15.93 15.97 5.30 0.08 -15.85 15 9 N -0.54 -13.74 5.07 -11.80 -0.06 -13.80 15 10 C -0.29 -8.30 10.16 -15.02 -0.15 -8.45 15 11 H 0.13 3.98 7.38 -52.48 -0.39 3.59 15 12 C 0.05 1.29 5.50 -17.45 -0.10 1.19 15 13 N -0.85 -23.77 13.95 55.50 0.77 -23.00 15 14 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 15 15 H -0.26 -5.75 7.11 56.52 0.40 -5.35 15 16 H -0.27 -5.87 7.11 56.52 0.40 -5.46 15 17 H -0.26 -5.54 6.52 56.52 0.37 -5.17 15 18 C -0.08 -1.40 9.45 -38.80 -0.37 -1.76 15 19 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.07 0.47 8.11 -51.93 -0.42 0.05 15 21 H 0.08 0.59 8.11 -51.93 -0.42 0.17 15 22 H 0.17 1.54 8.06 -52.48 -0.42 1.12 15 23 H 0.39 9.20 5.11 -40.82 -0.21 8.99 15 24 H 0.28 7.19 8.31 -40.82 -0.34 6.85 15 25 H 0.16 2.48 7.72 -52.48 -0.41 2.07 15 LS Contribution 233.37 15.07 3.52 3.52 Total: -1.00 -31.60 233.37 -3.27 -34.87 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -1.86 Total: 7.01 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.72 Total: 1.03 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 1.42 Total: -45.40 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.08 Total: -15.85 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.60 -3.27 -34.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241454.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.919 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds