Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38610 * 120.95938 * 2 1 4 4 N 1.32157 * 120.08380 * 179.97438 * 3 2 1 5 5 N 1.28350 * 122.30965 * 359.97438 * 4 3 2 6 6 C 1.32854 * 122.01691 * 0.02562 * 5 4 3 7 7 C 1.47989 * 120.18960 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99970 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00274 * 359.97438 * 7 6 5 10 10 C 1.36784 * 120.00017 * 180.02562 * 9 7 6 11 11 H 1.08007 * 120.00294 * 359.97438 * 10 9 7 12 12 C 1.39105 * 119.99940 * 179.97438 * 10 9 7 13 13 N 1.31326 * 119.99982 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00141 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47162 * 89.99627 * 14 12 10 16 16 H 1.48495 * 109.47171 * 210.00296 * 14 12 10 17 17 H 1.48503 * 109.46848 * 330.00022 * 14 12 10 18 18 C 1.38772 * 120.96383 * 179.97438 * 2 1 3 19 19 H 1.08990 * 109.47144 * 270.02308 * 1 2 3 20 20 H 1.08999 * 109.46832 * 30.02429 * 1 2 3 21 21 H 1.09000 * 109.46761 * 150.01906 * 1 2 3 22 22 H 1.08006 * 119.96047 * 359.95228 * 3 2 1 23 23 H 0.96995 * 120.00019 * 359.97438 * 9 7 6 24 24 H 0.97003 * 119.99991 * 180.02562 * 13 12 10 25 25 H 1.08003 * 121.05048 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2201 1.1886 0.0000 4 7 3.5416 1.1684 0.0005 5 7 4.2109 0.0733 0.0015 6 6 3.6171 -1.1152 0.0016 7 6 4.4288 -2.3526 0.0022 8 8 3.8818 -3.4383 0.0018 9 7 5.7744 -2.2760 0.0021 10 6 6.5245 -3.4198 0.0021 11 1 6.0386 -4.3844 0.0026 12 6 7.9133 -3.3407 0.0015 13 7 8.6336 -4.4388 0.0010 14 14 8.7539 -1.6725 0.0000 15 1 8.9771 -1.2294 1.3996 16 1 10.0591 -1.7765 -0.7005 17 1 7.8935 -0.6854 -0.7005 18 6 2.2211 -1.1900 0.0005 19 1 -0.3633 0.0004 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5135 22 1 1.6952 2.1325 -0.0008 23 1 6.2108 -1.4098 0.0013 24 1 9.6020 -4.3837 0.0010 25 1 1.7143 -2.1437 0.0005 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241454.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -7.681987 kcal Electronic energy + Delta-G solvation = -12725.148876 eV Core-core repulsion = 10317.178265 eV Total energy + Delta-G solvation = -2407.970612 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.14708 -40.08066 -36.34040 -35.46652 -34.08993 -33.47590 -29.16559 -27.83038 -25.41618 -24.42102 -21.61546 -20.74454 -19.06051 -17.79694 -17.46877 -17.04259 -16.49040 -15.76929 -15.26220 -15.01235 -14.61040 -14.40452 -13.95918 -13.93043 -13.25565 -13.12114 -12.55992 -12.36891 -12.02325 -11.72196 -11.13286 -10.89817 -10.75547 -10.73611 -10.43799 -8.61315 -6.16443 -0.52090 -0.24828 1.26559 1.28540 1.39114 1.73295 2.10644 2.44616 2.58323 3.01596 3.08091 3.49828 3.65717 3.72338 3.91603 4.16065 4.55414 4.81309 4.84413 5.01447 5.09064 5.34543 5.36562 5.75385 6.34719 6.61883 7.12868 7.53500 7.67776 8.53648 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.053406 B = 0.008829 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.155574 B = 3170.482520 C = 3679.494732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 C 0.047 3.953 4 N -0.266 5.266 5 N -0.266 5.266 6 C 0.039 3.961 7 C 0.480 3.520 8 O -0.613 6.613 9 N -0.547 5.547 10 C -0.334 4.334 11 H 0.074 0.926 12 C 0.007 3.993 13 N -0.900 5.900 14 Si 0.948 3.052 15 H -0.252 1.252 16 H -0.257 1.257 17 H -0.246 1.246 18 C -0.094 4.094 19 H 0.101 0.899 20 H 0.107 0.893 21 H 0.082 0.918 22 H 0.223 0.777 23 H 0.394 0.606 24 H 0.289 0.711 25 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.639 14.277 0.021 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.117 4.117 4 N -0.106 5.106 5 N -0.113 5.113 6 C -0.107 4.107 7 C 0.266 3.734 8 O -0.499 6.499 9 N -0.184 5.184 10 C -0.463 4.463 11 H 0.092 0.908 12 C -0.197 4.197 13 N -0.538 5.538 14 Si 0.767 3.233 15 H -0.176 1.176 16 H -0.181 1.181 17 H -0.170 1.170 18 C -0.124 4.124 19 H 0.119 0.881 20 H 0.126 0.874 21 H 0.101 0.899 22 H 0.239 0.761 23 H 0.231 0.769 24 H 0.099 0.901 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.307 14.271 0.018 18.844 hybrid contribution -0.230 -0.612 0.002 0.654 sum -12.538 13.658 0.020 18.540 Atomic orbital electron populations 1.20972 0.84856 1.05712 1.04992 1.21648 1.00833 0.91528 0.93669 1.25084 0.91303 1.01216 0.94105 1.72938 1.09299 1.18631 1.09779 1.73154 1.32785 0.94982 1.10408 1.22747 0.94647 0.93633 0.99641 1.17615 0.82315 0.87624 0.85826 1.90611 1.71800 1.29267 1.58272 1.42011 1.05628 1.08687 1.62056 1.19217 0.89734 0.86783 1.50571 0.90766 1.26023 0.95976 1.02707 0.94990 1.69696 1.07782 1.30051 1.46282 0.85588 0.79407 0.77615 0.80641 1.17603 1.18065 1.17049 1.22447 0.92224 1.01864 0.95822 0.88101 0.87393 0.89918 0.76092 0.76944 0.90122 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.07 71.24 0.72 -0.40 15 2 C -0.07 -1.38 5.92 -19.64 -0.12 -1.50 15 3 C 0.05 1.02 11.02 84.73 0.93 1.96 15 4 N -0.27 -8.55 11.51 -57.13 -0.66 -9.20 15 5 N -0.27 -10.55 10.75 -48.52 -0.52 -11.07 15 6 C 0.04 1.60 6.83 41.96 0.29 1.89 15 7 C 0.48 24.70 7.76 86.83 0.67 25.37 15 8 O -0.61 -35.36 15.97 -3.93 -0.06 -35.42 15 9 N -0.55 -29.18 5.07 -309.51 -1.57 -30.75 15 10 C -0.33 -20.13 10.16 84.13 0.85 -19.28 15 11 H 0.07 5.12 7.38 -2.91 -0.02 5.10 15 12 C 0.01 0.37 5.50 84.98 0.47 0.84 15 13 N -0.90 -53.05 13.95 21.69 0.30 -52.75 15 14 Si 0.95 41.02 27.74 68.60 1.90 42.92 15 15 H -0.25 -10.37 7.11 99.48 0.71 -9.66 15 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 17 H -0.25 -10.13 6.52 99.48 0.65 -9.48 15 18 C -0.09 -2.96 9.45 22.78 0.22 -2.74 15 19 H 0.10 0.78 8.14 -2.39 -0.02 0.76 15 20 H 0.11 0.52 8.11 -2.39 -0.02 0.50 15 21 H 0.08 0.85 8.11 -2.39 -0.02 0.83 15 22 H 0.22 2.32 8.06 -2.91 -0.02 2.29 15 23 H 0.39 19.17 5.11 -92.71 -0.47 18.70 15 24 H 0.29 15.34 8.31 -92.71 -0.77 14.57 15 25 H 0.16 4.85 7.72 -2.91 -0.02 4.83 15 Total: -1.00 -75.56 233.37 4.12 -71.44 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.69 Total: 18.69 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.03 Total: 6.13 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -2.45 Total: -103.77 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.06 Total: -35.42 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.90 Total: 42.92 kcal Total: -75.56 4.12 -71.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241454.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.757 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds