Wall clock time and date at job start Mon Mar 30 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38614 * 119.95562 * 2 1 4 4 C 1.38771 * 118.07427 * 179.97438 * 3 2 1 5 5 C 1.39814 * 117.89406 * 0.02562 * 4 3 2 6 6 C 1.47996 * 120.19184 * 179.97438 * 5 4 3 7 7 O 1.21564 * 120.00107 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00330 * 179.97438 * 6 5 4 9 9 C 1.36785 * 120.00425 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99330 * 359.72748 * 9 8 6 11 11 C 1.39098 * 120.00128 * 179.72863 * 9 8 6 12 12 N 1.31328 * 120.00339 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00127 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47474 * 89.99513 * 13 11 9 15 15 H 1.48498 * 109.47278 * 209.99948 * 13 11 9 16 16 H 1.48507 * 109.46754 * 329.99779 * 13 11 9 17 17 N 1.32852 * 119.62237 * 0.27027 * 5 4 3 18 18 N 1.28361 * 122.00760 * 359.42496 * 17 5 4 19 19 H 1.09003 * 109.47102 * 89.99398 * 1 2 3 20 20 H 1.08998 * 109.47069 * 209.99652 * 1 2 3 21 21 H 1.08995 * 109.46874 * 329.99941 * 1 2 3 22 22 H 1.07999 * 120.96081 * 0.02562 * 3 2 1 23 23 H 1.08004 * 121.05298 * 180.02562 * 4 3 2 24 24 H 0.97005 * 119.99791 * 359.72804 * 8 6 5 25 25 H 0.96999 * 120.00305 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.2010 0.0000 4 6 3.5862 1.1554 0.0005 5 6 4.1994 -0.1011 0.0005 6 6 5.6754 -0.2089 0.0005 7 8 6.3583 0.7967 0.0001 8 7 6.2625 -1.4221 0.0010 9 6 7.6267 -1.5218 0.0015 10 1 8.2333 -0.6283 -0.0029 11 6 8.2326 -2.7739 0.0077 12 7 7.4948 -3.8604 0.0136 13 14 10.0956 -2.9101 0.0092 14 1 10.5888 -2.9394 1.4096 15 1 10.5012 -4.1587 -0.6847 16 1 10.6779 -1.7402 -0.6963 17 7 3.4495 -1.1977 -0.0055 18 7 2.1669 -1.1450 -0.0004 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5138 22 1 1.6742 2.1448 0.0004 23 1 4.1734 2.0619 0.0010 24 1 5.7176 -2.2246 0.0053 25 1 7.9173 -4.7335 0.0183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260257691.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:27 Heat of formation + Delta-G solvation = 11.660956 kcal Electronic energy + Delta-G solvation = -12639.810975 eV Core-core repulsion = 10232.679137 eV Total energy + Delta-G solvation = -2407.131839 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58752 -37.95013 -34.24619 -33.63610 -32.47795 -31.42627 -28.30210 -25.38824 -24.30085 -22.74644 -20.15447 -18.21212 -17.33550 -16.48696 -15.27479 -14.96323 -14.88306 -13.99393 -13.91773 -13.51698 -12.99556 -12.71117 -12.55319 -12.29055 -11.74524 -11.22179 -10.91552 -10.51502 -10.40990 -9.90356 -9.74074 -9.29235 -9.23595 -8.65204 -8.19023 -6.67898 -3.96714 0.96957 1.17988 3.07038 3.16395 3.22252 3.49016 3.97390 4.28042 4.34059 4.61617 4.78110 4.91578 5.18362 5.28617 5.33179 5.52278 5.54783 5.79062 5.95883 6.24790 6.36805 6.63138 7.30033 7.82942 8.39141 8.91668 9.06511 9.34260 9.88892 10.46687 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.068896 B = 0.007430 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.313519 B = 3767.643712 C = 4158.807520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.046 3.954 3 C -0.128 4.128 4 C -0.079 4.079 5 C 0.055 3.945 6 C 0.459 3.541 7 O -0.600 6.600 8 N -0.510 5.510 9 C -0.293 4.293 10 H 0.113 0.887 11 C 0.026 3.974 12 N -0.866 5.866 13 Si 0.940 3.060 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.265 1.265 17 N -0.228 5.228 18 N -0.244 5.244 19 H 0.078 0.922 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.146 0.854 23 H 0.156 0.844 24 H 0.406 0.594 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 5.519 -0.018 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.156 4.156 4 C -0.109 4.109 5 C -0.090 4.090 6 C 0.246 3.754 7 O -0.488 6.488 8 N -0.141 5.141 9 C -0.423 4.423 10 H 0.131 0.869 11 C -0.180 4.180 12 N -0.504 5.504 13 Si 0.765 3.235 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.189 1.189 17 N -0.074 5.074 18 N -0.088 5.088 19 H 0.097 0.903 20 H 0.097 0.903 21 H 0.093 0.907 22 H 0.164 0.836 23 H 0.173 0.827 24 H 0.242 0.758 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.139 4.272 -0.030 10.089 hybrid contribution 0.557 0.981 0.008 1.128 sum -8.583 5.253 -0.022 10.063 Atomic orbital electron populations 1.20593 0.87988 1.03535 1.03121 1.22838 0.98732 0.90864 0.97455 1.22138 0.94427 0.99498 0.99569 1.22356 0.94507 0.99562 0.94515 1.23309 0.97813 0.91055 0.96862 1.16985 0.84099 0.84932 0.89429 1.90607 1.62618 1.35775 1.59763 1.41950 1.07892 1.07119 1.57177 1.20003 0.81532 0.94529 1.46281 0.86943 1.25565 1.01703 0.94572 0.96168 1.69628 1.37123 0.98558 1.45080 0.85703 0.80709 0.78250 0.78811 1.19875 1.20462 1.18907 1.73319 0.98955 1.26460 1.08706 1.72972 1.01911 1.24608 1.09316 0.90325 0.90252 0.90724 0.83618 0.82651 0.75784 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.19 36.01 0.37 -0.57 15 2 C 0.05 0.69 6.87 -82.31 -0.57 0.13 15 3 C -0.13 -1.79 9.86 -39.25 -0.39 -2.17 15 4 C -0.08 -1.40 9.73 -38.80 -0.38 -1.78 15 5 C 0.06 1.21 6.83 -82.84 -0.57 0.64 15 6 C 0.46 11.87 7.76 -12.26 -0.10 11.77 15 7 O -0.60 -16.73 15.97 5.31 0.08 -16.64 15 8 N -0.51 -13.79 5.27 -11.80 -0.06 -13.85 15 9 C -0.29 -8.14 9.68 -15.02 -0.15 -8.28 15 10 H 0.11 3.19 7.15 -52.49 -0.38 2.81 15 11 C 0.03 0.69 5.50 -17.45 -0.10 0.60 15 12 N -0.87 -23.32 13.05 55.50 0.72 -22.59 15 13 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 15 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 16 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 17 N -0.23 -5.01 10.75 33.32 0.36 -4.65 15 18 N -0.24 -4.68 11.43 33.63 0.38 -4.30 15 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 0.55 8.09 -51.93 -0.42 0.13 15 22 H 0.15 1.39 8.06 -52.49 -0.42 0.96 15 23 H 0.16 2.55 7.72 -52.48 -0.41 2.15 15 24 H 0.41 10.95 7.25 -40.82 -0.30 10.66 15 25 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 236.61 15.07 3.57 3.57 Total: -1.00 -31.31 236.61 -3.73 -35.04 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -1.90 Total: 7.94 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.87 Total: 0.34 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 1.40 Total: -45.40 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.08 Total: -16.64 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.31 -3.73 -35.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257691.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.703 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds