Wall clock time and date at job start Mon Mar 30 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86794 * 120.00525 * 2 1 4 4 H 1.48501 * 109.47495 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00335 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99675 * 3 2 1 7 7 C 1.40153 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.41179 * 120.00049 * 0.28279 * 7 2 1 10 10 N 1.31915 * 126.53493 * 359.73934 * 9 7 2 11 11 O 1.41318 * 109.36718 * 179.97438 * 10 9 7 12 12 C 1.34957 * 109.71246 * 0.02562 * 11 10 9 13 13 C 1.40143 * 107.53929 * 359.74576 * 12 11 10 14 14 C 1.39256 * 120.02846 * 179.71346 * 13 12 11 15 15 C 1.37868 * 119.77348 * 0.53561 * 14 13 12 16 16 C 1.38621 * 120.31027 * 359.71838 * 15 14 13 17 17 C 1.38071 * 120.51767 * 0.02562 * 16 15 14 18 18 F 1.35099 * 120.04996 * 179.97438 * 17 16 15 19 19 H 0.97005 * 119.99591 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.11304 * 180.23521 * 14 13 12 21 21 H 1.07997 * 119.83961 * 179.74422 * 15 14 13 22 22 H 1.07999 * 119.74196 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0464 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5384 1.4400 0.7001 7 6 2.0074 -1.2138 0.0005 8 1 3.0874 -1.2138 0.0001 9 6 1.3015 -2.4364 -0.0049 10 7 -0.0091 -2.5865 -0.0060 11 8 -0.3231 -3.9643 -0.0126 12 6 0.8145 -4.6904 -0.0152 13 6 1.8895 -3.7912 -0.0162 14 6 3.1976 -4.2688 -0.0128 15 6 3.4302 -5.6277 -0.0196 16 6 2.3688 -6.5192 -0.0240 17 6 1.0669 -6.0593 -0.0221 18 9 0.0395 -6.9366 -0.0269 19 1 -0.4850 0.8401 0.0004 20 1 4.0270 -3.5770 -0.0097 21 1 4.4443 -5.9992 -0.0211 22 1 2.5616 -7.5818 -0.0289 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260266044.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:37 Heat of formation + Delta-G solvation = -2.201712 kcal Electronic energy + Delta-G solvation = -12661.349274 eV Core-core repulsion = 10097.863249 eV Total energy + Delta-G solvation = -2563.486025 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.25418 -40.02172 -36.52924 -34.24790 -31.59434 -29.14602 -28.99332 -26.43438 -22.34325 -21.94088 -20.44257 -17.58091 -16.90821 -15.94105 -15.47538 -15.31578 -15.00150 -14.48982 -13.85863 -13.46154 -12.98551 -12.45625 -11.74053 -11.47530 -11.25898 -11.24973 -11.06338 -10.70985 -10.33243 -10.17196 -9.30680 -8.98093 -7.97274 -7.63768 -6.88532 -4.98388 1.49353 1.91038 2.88629 2.98799 3.03113 3.63373 3.78778 4.07578 4.21917 4.82311 5.11191 5.26304 5.58728 5.68245 5.75658 5.81580 6.49783 6.56722 6.67389 6.77022 6.94820 6.97640 7.42347 7.91670 8.27816 8.51662 9.31919 10.07216 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.056122 B = 0.009796 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.796128 B = 2857.655418 C = 3346.603603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.064 3.936 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.095 0.905 9 C 0.210 3.790 10 N -0.351 5.351 11 O -0.152 6.152 12 C 0.058 3.942 13 C -0.151 4.151 14 C -0.055 4.055 15 C -0.157 4.157 16 C -0.118 4.118 17 C 0.058 3.942 18 F -0.145 7.145 19 H 0.286 0.714 20 H 0.129 0.871 21 H 0.129 0.871 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -4.239 -0.024 8.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.160 4.160 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.456 4.456 8 H 0.113 0.887 9 C 0.055 3.945 10 N -0.126 5.126 11 O -0.145 6.145 12 C 0.001 3.999 13 C -0.154 4.154 14 C -0.075 4.075 15 C -0.175 4.175 16 C -0.138 4.138 17 C 0.037 3.963 18 F -0.124 7.124 19 H 0.097 0.903 20 H 0.147 0.853 21 H 0.146 0.854 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.595 -3.812 -0.019 6.770 hybrid contribution 0.870 0.239 -0.012 0.902 sum 6.465 -3.573 -0.031 7.387 Atomic orbital electron populations 1.69804 1.07481 1.29719 1.29892 1.26062 0.95065 1.01679 0.93222 0.86017 0.80122 0.79567 0.79418 1.19133 1.19894 1.18247 1.18881 0.94446 0.87287 1.44992 0.88675 1.21118 0.90464 0.90567 0.92366 1.81418 1.12101 0.78927 1.40183 1.89144 1.25681 1.18743 1.80958 1.20360 0.90393 0.91886 0.97308 1.21205 0.93655 0.93221 1.07358 1.20686 0.95322 0.95056 0.96397 1.20606 0.98179 0.92391 1.06367 1.20750 0.89896 1.00439 1.02711 1.16581 0.84750 0.82548 1.12424 1.91429 1.58102 1.68092 1.94785 0.90317 0.85318 0.85356 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.88 11.97 55.56 0.66 -19.21 14 2 C 0.06 1.59 5.50 -17.33 -0.10 1.50 14 3 Si 0.93 17.81 29.56 -169.99 -5.02 12.78 14 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.79 14 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 7 C -0.42 -10.67 9.44 -37.75 -0.36 -11.03 14 8 H 0.10 2.16 7.85 -52.49 -0.41 1.75 14 9 C 0.21 5.77 6.95 -82.85 -0.58 5.19 14 10 N -0.35 -10.45 11.13 33.37 0.37 -10.08 14 11 O -0.15 -4.31 12.04 7.31 0.09 -4.22 14 12 C 0.06 1.42 7.43 -38.51 -0.29 1.14 14 13 C -0.15 -3.60 6.30 -104.94 -0.66 -4.26 14 14 C -0.05 -1.04 10.09 -39.34 -0.40 -1.43 14 15 C -0.16 -2.49 10.03 -39.58 -0.40 -2.89 14 16 C -0.12 -1.97 10.00 -39.50 -0.39 -2.37 14 17 C 0.06 1.21 7.32 -39.28 -0.29 0.92 14 18 F -0.15 -2.99 17.27 2.25 0.04 -2.95 14 19 H 0.29 6.85 8.29 -40.82 -0.34 6.51 14 20 H 0.13 2.11 8.06 -52.48 -0.42 1.69 14 21 H 0.13 1.53 8.06 -52.49 -0.42 1.10 14 22 H 0.13 1.75 8.06 -52.49 -0.42 1.32 14 LS Contribution 216.66 15.07 3.27 3.27 Total: -1.00 -30.24 216.66 -4.86 -35.10 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -0.81 Total: -1.44 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -3.45 Total: -13.24 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 1.04 Total: -29.29 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: 0.09 Total: -4.22 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.02 Total: 12.78 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.24 -4.86 -35.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266044.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds