Wall clock time and date at job start Mon Mar 30 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86794 * 120.00525 * 2 1 4 4 H 1.48501 * 109.47495 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00335 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99675 * 3 2 1 7 7 C 1.40153 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.41179 * 120.00049 * 0.28279 * 7 2 1 10 10 N 1.31915 * 126.53493 * 359.73934 * 9 7 2 11 11 O 1.41318 * 109.36718 * 179.97438 * 10 9 7 12 12 C 1.34957 * 109.71246 * 0.02562 * 11 10 9 13 13 C 1.40143 * 107.53929 * 359.74576 * 12 11 10 14 14 C 1.39256 * 120.02846 * 179.71346 * 13 12 11 15 15 C 1.37868 * 119.77348 * 0.53561 * 14 13 12 16 16 C 1.38621 * 120.31027 * 359.71838 * 15 14 13 17 17 C 1.38071 * 120.51767 * 0.02562 * 16 15 14 18 18 F 1.35099 * 120.04996 * 179.97438 * 17 16 15 19 19 H 0.97005 * 119.99591 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.11304 * 180.23521 * 14 13 12 21 21 H 1.07997 * 119.83961 * 179.74422 * 15 14 13 22 22 H 1.07999 * 119.74196 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0464 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5384 1.4400 0.7001 7 6 2.0074 -1.2138 0.0005 8 1 3.0874 -1.2138 0.0001 9 6 1.3015 -2.4364 -0.0049 10 7 -0.0091 -2.5865 -0.0060 11 8 -0.3231 -3.9643 -0.0126 12 6 0.8145 -4.6904 -0.0152 13 6 1.8895 -3.7912 -0.0162 14 6 3.1976 -4.2688 -0.0128 15 6 3.4302 -5.6277 -0.0196 16 6 2.3688 -6.5192 -0.0240 17 6 1.0669 -6.0593 -0.0221 18 9 0.0395 -6.9366 -0.0269 19 1 -0.4850 0.8401 0.0004 20 1 4.0270 -3.5770 -0.0097 21 1 4.4443 -5.9992 -0.0211 22 1 2.5616 -7.5818 -0.0289 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260266044.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:37 Heat of formation + Delta-G solvation = -22.213401 kcal Electronic energy + Delta-G solvation = -12662.217046 eV Core-core repulsion = 10097.863249 eV Total energy + Delta-G solvation = -2564.353797 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.85594 -41.79682 -38.13900 -36.14204 -33.45965 -30.72839 -30.65993 -28.39528 -24.00176 -23.52880 -22.29295 -19.36628 -18.56985 -17.72012 -17.06466 -17.01265 -16.62640 -16.07982 -15.69725 -15.01061 -14.65643 -14.06160 -13.37527 -13.12122 -12.87787 -12.78658 -12.70802 -12.33641 -11.95706 -11.87551 -11.24408 -10.81180 -9.67884 -9.27706 -8.73381 -6.99221 -0.06921 0.33630 1.31830 1.41090 1.59807 1.88674 2.17048 2.37276 2.61755 3.22678 3.23676 3.87257 3.90754 4.17878 4.29512 4.35340 4.91598 5.00722 5.11197 5.17510 5.28884 5.44356 5.86733 6.06908 6.39610 6.57754 7.40576 8.25643 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.056122 B = 0.009796 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.796128 B = 2857.655418 C = 3346.603603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.014 3.986 3 Si 1.014 2.986 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.239 1.239 7 C -0.436 4.436 8 H 0.122 0.878 9 C 0.181 3.819 10 N -0.410 5.410 11 O -0.193 6.193 12 C 0.010 3.990 13 C -0.179 4.179 14 C -0.055 4.055 15 C -0.125 4.125 16 C -0.093 4.093 17 C 0.039 3.961 18 F -0.150 7.150 19 H 0.292 0.708 20 H 0.157 0.843 21 H 0.190 0.810 22 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.022 -4.939 -0.013 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.206 4.206 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.162 1.162 7 C -0.475 4.475 8 H 0.140 0.860 9 C 0.027 3.973 10 N -0.188 5.188 11 O -0.188 6.188 12 C -0.044 4.044 13 C -0.182 4.182 14 C -0.074 4.074 15 C -0.143 4.143 16 C -0.112 4.112 17 C 0.018 3.982 18 F -0.129 7.129 19 H 0.102 0.898 20 H 0.175 0.825 21 H 0.207 0.793 22 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.525 -4.564 -0.008 10.562 hybrid contribution -0.249 0.286 -0.018 0.379 sum 9.277 -4.278 -0.026 10.215 Atomic orbital electron populations 1.69959 1.09940 1.31244 1.30826 1.27377 0.95760 1.05997 0.91506 0.84735 0.78920 0.73394 0.79844 1.18251 1.19670 1.16160 1.19530 0.95798 0.87407 1.44761 0.86046 1.21744 0.90576 0.93004 0.91970 1.81276 1.14247 0.80212 1.43070 1.88998 1.27867 1.18811 1.83076 1.20993 0.89738 0.93736 0.99972 1.21341 0.95738 0.91406 1.09749 1.21159 0.93678 0.97338 0.95222 1.21316 1.00663 0.90547 1.01753 1.21418 0.87706 1.03234 0.98817 1.17091 0.86441 0.81095 1.13542 1.91409 1.58798 1.67754 1.94955 0.89751 0.82528 0.79279 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.34 11.97 21.86 0.26 -44.08 14 2 C 0.01 0.68 5.50 85.33 0.47 1.15 14 3 Si 1.01 35.92 29.56 68.60 2.03 37.94 14 4 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 5 H -0.27 -9.44 7.11 99.48 0.71 -8.73 14 6 H -0.24 -7.64 7.11 99.48 0.71 -6.94 14 7 C -0.44 -22.68 9.44 23.46 0.22 -22.46 14 8 H 0.12 5.38 7.85 -2.91 -0.02 5.36 14 9 C 0.18 10.40 6.95 42.35 0.29 10.69 14 10 N -0.41 -26.25 11.13 -48.34 -0.54 -26.79 14 11 O -0.19 -11.83 12.04 28.55 0.34 -11.48 14 12 C 0.01 0.54 7.43 22.96 0.17 0.71 14 13 C -0.18 -8.67 6.30 -20.07 -0.13 -8.80 14 14 C -0.05 -1.89 10.09 22.43 0.23 -1.66 14 15 C -0.13 -3.23 10.03 22.27 0.22 -3.01 14 16 C -0.09 -2.66 10.00 22.32 0.22 -2.43 14 17 C 0.04 1.60 7.32 22.46 0.16 1.76 14 18 F -0.15 -6.18 17.27 44.97 0.78 -5.40 14 19 H 0.29 14.60 8.29 -92.70 -0.77 13.83 14 20 H 0.16 4.46 8.06 -2.91 -0.02 4.44 14 21 H 0.19 2.77 8.06 -2.91 -0.02 2.75 14 22 H 0.18 3.50 8.06 -2.91 -0.02 3.48 14 Total: -1.00 -73.70 216.66 6.00 -67.70 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.26 Total: 6.14 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 1.87 Total: -24.04 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.28 Total: -70.87 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.34 Total: -11.48 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.78 Total: -5.40 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.94 kcal Total: -73.70 6.00 -67.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266044.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.489 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds