Wall clock time and date at job start Mon Mar 30 2020 02:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35185 * 124.76219 * 2 1 4 4 C 1.39099 * 108.76036 * 179.75717 * 3 2 1 5 5 C 1.41141 * 126.96559 * 180.20969 * 4 3 2 6 6 H 1.07998 * 119.99603 * 161.33558 * 5 4 3 7 7 C 1.39585 * 120.00201 * 341.33582 * 5 4 3 8 8 N 1.31129 * 120.00012 * 164.45367 * 7 5 4 9 9 Si 1.86801 * 120.00046 * 344.45665 * 7 5 4 10 10 H 1.48500 * 109.47309 * 90.82435 * 9 7 5 11 11 H 1.48503 * 109.46996 * 210.82707 * 9 7 5 12 12 H 1.48506 * 109.47056 * 330.82131 * 9 7 5 13 13 C 1.47440 * 106.06299 * 0.24040 * 4 3 2 14 14 S 1.75833 * 143.09471 * 179.97438 * 13 4 3 15 15 C 1.75638 * 91.22345 * 180.02562 * 14 13 4 16 16 C 1.32781 * 110.26866 * 0.02562 * 15 14 13 17 17 C 1.37173 * 107.00435 * 0.02562 * 13 4 3 18 18 H 1.09007 * 109.46653 * 90.02300 * 1 2 3 19 19 H 1.09000 * 109.47558 * 210.02503 * 1 2 3 20 20 H 1.09006 * 109.47093 * 330.03059 * 1 2 3 21 21 H 1.07995 * 125.62116 * 0.02714 * 3 2 1 22 22 H 0.97000 * 119.99942 * 180.02562 * 8 7 5 23 23 H 1.07998 * 124.87197 * 179.97438 * 15 14 13 24 24 H 1.07998 * 122.16606 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2358 1.1106 0.0000 4 6 3.5729 0.7271 0.0056 5 6 4.6996 1.5772 0.0116 6 1 5.6629 1.1946 0.3148 7 6 4.5687 2.9122 -0.3744 8 7 5.5150 3.7734 -0.0875 9 14 3.0455 3.4720 -1.2996 10 1 2.0174 3.9286 -0.3302 11 1 3.4016 4.5918 -2.2077 12 1 2.5068 2.3407 -2.0966 13 6 3.5745 -0.7473 0.0032 14 16 4.6318 -2.1521 0.0054 15 6 3.2514 -3.2381 -0.0030 16 6 2.1198 -2.5435 -0.0074 17 6 2.2632 -1.1498 -0.0041 18 1 -0.3633 -0.0004 -1.0278 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8903 0.5134 21 1 1.8732 2.1278 0.0004 22 1 5.4239 4.7012 -0.3554 23 1 3.3139 -4.3162 -0.0051 24 1 1.1515 -3.0219 -0.0132 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260398514.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:20 Heat of formation + Delta-G solvation = 71.843854 kcal Electronic energy + Delta-G solvation = -11098.033356 eV Core-core repulsion = 9103.971364 eV Total energy + Delta-G solvation = -1994.061992 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68028 -34.67765 -33.49896 -31.34793 -27.78694 -26.16907 -23.97353 -21.69702 -20.11830 -18.46881 -17.14683 -16.03422 -14.65639 -14.43847 -14.28572 -13.94770 -13.41147 -12.99550 -12.32301 -12.05497 -11.63161 -11.28641 -11.07021 -10.64016 -10.45113 -10.12719 -9.92213 -9.55919 -9.14653 -8.25436 -6.98859 -6.75981 -6.64128 -4.06056 1.92207 2.53145 3.05661 3.07825 3.23942 3.35871 3.65026 3.84517 3.94921 4.14151 5.28713 5.36428 5.49539 5.64148 5.77966 5.91011 6.04416 6.27189 6.64621 6.89330 7.05268 7.34717 7.70102 8.17200 8.33556 8.62567 8.84463 9.07499 10.42257 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.036480 B = 0.013986 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.358309 B = 2001.579245 C = 2668.132449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.450 5.450 3 C -0.142 4.142 4 C 0.072 3.928 5 C -0.434 4.434 6 H 0.086 0.914 7 C 0.083 3.917 8 N -0.837 5.837 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.247 1.247 13 C -0.229 4.229 14 S 0.091 5.909 15 C -0.230 4.230 16 C -0.101 4.101 17 C 0.024 3.976 18 H 0.053 0.947 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.147 0.853 22 H 0.279 0.721 23 H 0.156 0.844 24 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -7.547 -0.765 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.136 5.136 3 C -0.268 4.268 4 C 0.062 3.938 5 C -0.466 4.466 6 H 0.104 0.896 7 C -0.131 4.131 8 N -0.465 5.465 9 Si 0.732 3.268 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.171 1.171 13 C -0.353 4.353 14 S 0.350 5.650 15 C -0.365 4.365 16 C -0.136 4.136 17 C -0.088 4.088 18 H 0.072 0.928 19 H 0.087 0.913 20 H 0.090 0.910 21 H 0.164 0.836 22 H 0.089 0.911 23 H 0.173 0.827 24 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.479 -7.502 -0.759 9.941 hybrid contribution -2.350 0.690 -0.405 2.483 sum -8.829 -6.811 -1.164 11.212 Atomic orbital electron populations 1.21688 0.79748 1.02682 1.01446 1.42905 1.03714 1.03418 1.63544 1.21613 0.89829 0.89123 1.26255 1.17730 0.91444 0.86648 0.97960 1.18537 0.95308 0.92844 1.39937 0.89622 1.25787 0.97104 0.95926 0.94243 1.69786 1.34015 1.04064 1.38657 0.86503 0.81664 0.78188 0.80484 1.20255 1.22199 1.17052 1.23691 0.93888 0.98185 1.19549 1.83360 1.07831 0.94894 1.78869 1.24893 0.95945 1.02230 1.13447 1.18792 0.98532 0.90006 1.06254 1.18048 0.89654 0.87829 1.13304 0.92836 0.91350 0.91029 0.83650 0.91131 0.82676 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 11.06 59.85 0.66 2.04 14 2 N -0.45 -9.82 3.19 -120.92 -0.39 -10.20 14 3 C -0.14 -3.50 8.71 -15.76 -0.14 -3.64 14 4 C 0.07 1.94 5.68 -104.73 -0.59 1.35 14 5 C -0.43 -12.54 9.94 -37.98 -0.38 -12.92 14 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 14 7 C 0.08 2.31 5.50 -17.35 -0.10 2.22 14 8 N -0.84 -23.74 13.94 55.53 0.77 -22.96 14 9 Si 0.90 21.36 24.53 -169.99 -4.17 17.19 14 10 H -0.28 -6.20 6.69 56.52 0.38 -5.83 14 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 14 12 H -0.25 -5.94 6.56 56.52 0.37 -5.57 14 13 C -0.23 -5.65 7.49 -36.22 -0.27 -5.92 14 14 S 0.09 1.85 23.31 -107.50 -2.51 -0.65 14 15 C -0.23 -3.95 11.15 28.86 0.32 -3.63 14 16 C -0.10 -1.85 10.17 -40.75 -0.41 -2.26 14 17 C 0.02 0.54 7.16 -83.83 -0.60 -0.06 14 18 H 0.05 0.76 8.14 -51.92 -0.42 0.34 14 19 H 0.07 0.91 8.14 -51.93 -0.42 0.48 14 20 H 0.07 1.01 8.13 -51.93 -0.42 0.58 14 21 H 0.15 3.47 4.17 -52.49 -0.22 3.25 14 22 H 0.28 7.20 8.30 -40.82 -0.34 6.86 14 23 H 0.16 2.07 8.06 -52.49 -0.42 1.65 14 24 H 0.12 1.79 8.06 -52.49 -0.42 1.37 14 LS Contribution 223.25 15.07 3.36 3.36 Total: -1.00 -30.76 223.25 -6.37 -37.14 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -1.94 Total: -1.04 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -1.51 Total: -22.83 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.39 Total: -33.16 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.17 Total: 17.19 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.51 Total: -0.65 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.76 -6.37 -37.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260398514.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.980 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds