Wall clock time and date at job start Mon Mar 30 2020 02:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35185 * 124.76219 * 2 1 4 4 C 1.39099 * 108.76036 * 179.75717 * 3 2 1 5 5 C 1.41141 * 126.96559 * 180.20969 * 4 3 2 6 6 H 1.07998 * 119.99603 * 161.33558 * 5 4 3 7 7 C 1.39585 * 120.00201 * 341.33582 * 5 4 3 8 8 N 1.31129 * 120.00012 * 164.45367 * 7 5 4 9 9 Si 1.86801 * 120.00046 * 344.45665 * 7 5 4 10 10 H 1.48500 * 109.47309 * 90.82435 * 9 7 5 11 11 H 1.48503 * 109.46996 * 210.82707 * 9 7 5 12 12 H 1.48506 * 109.47056 * 330.82131 * 9 7 5 13 13 C 1.47440 * 106.06299 * 0.24040 * 4 3 2 14 14 S 1.75833 * 143.09471 * 179.97438 * 13 4 3 15 15 C 1.75638 * 91.22345 * 180.02562 * 14 13 4 16 16 C 1.32781 * 110.26866 * 0.02562 * 15 14 13 17 17 C 1.37173 * 107.00435 * 0.02562 * 13 4 3 18 18 H 1.09007 * 109.46653 * 90.02300 * 1 2 3 19 19 H 1.09000 * 109.47558 * 210.02503 * 1 2 3 20 20 H 1.09006 * 109.47093 * 330.03059 * 1 2 3 21 21 H 1.07995 * 125.62116 * 0.02714 * 3 2 1 22 22 H 0.97000 * 119.99942 * 180.02562 * 8 7 5 23 23 H 1.07998 * 124.87197 * 179.97438 * 15 14 13 24 24 H 1.07998 * 122.16606 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2358 1.1106 0.0000 4 6 3.5729 0.7271 0.0056 5 6 4.6996 1.5772 0.0116 6 1 5.6629 1.1946 0.3148 7 6 4.5687 2.9122 -0.3744 8 7 5.5150 3.7734 -0.0875 9 14 3.0455 3.4720 -1.2996 10 1 2.0174 3.9286 -0.3302 11 1 3.4016 4.5918 -2.2077 12 1 2.5068 2.3407 -2.0966 13 6 3.5745 -0.7473 0.0032 14 16 4.6318 -2.1521 0.0054 15 6 3.2514 -3.2381 -0.0030 16 6 2.1198 -2.5435 -0.0074 17 6 2.2632 -1.1498 -0.0041 18 1 -0.3633 -0.0004 -1.0278 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8903 0.5134 21 1 1.8732 2.1278 0.0004 22 1 5.4239 4.7012 -0.3554 23 1 3.3139 -4.3162 -0.0051 24 1 1.1515 -3.0219 -0.0132 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260398514.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:20 Heat of formation + Delta-G solvation = 51.662167 kcal Electronic energy + Delta-G solvation = -11098.908500 eV Core-core repulsion = 9103.971364 eV Total energy + Delta-G solvation = -1994.937136 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38657 -36.25941 -35.43320 -33.10477 -29.53127 -27.80098 -25.68553 -23.27900 -21.97851 -20.13653 -18.94490 -17.86110 -16.42560 -15.96958 -15.87970 -15.68797 -15.03863 -14.71337 -13.74676 -13.52916 -13.30440 -12.95697 -12.89753 -12.49044 -12.24285 -11.77159 -11.53220 -11.47035 -11.10253 -9.99491 -8.71726 -8.70099 -8.50863 -6.13972 0.39226 0.96749 1.16702 1.31448 1.47682 1.53759 1.83296 2.12650 2.18701 2.36369 3.26131 4.02086 4.21620 4.29553 4.50586 4.55320 4.69429 4.74436 5.03706 5.21637 5.35016 5.50315 5.81597 6.23689 6.41582 6.70498 6.92240 6.98291 8.41546 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.036480 B = 0.013986 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.358309 B = 2001.579245 C = 2668.132449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.453 5.453 3 C -0.135 4.135 4 C 0.027 3.973 5 C -0.466 4.466 6 H 0.039 0.961 7 C 0.036 3.964 8 N -0.883 5.883 9 Si 0.970 3.030 10 H -0.252 1.252 11 H -0.283 1.283 12 H -0.253 1.253 13 C -0.287 4.287 14 S 0.065 5.935 15 C -0.192 4.192 16 C -0.111 4.111 17 C 0.032 3.968 18 H 0.073 0.927 19 H 0.098 0.902 20 H 0.087 0.913 21 H 0.154 0.846 22 H 0.286 0.714 23 H 0.206 0.794 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 -9.520 -1.244 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.136 5.136 3 C -0.263 4.263 4 C 0.017 3.983 5 C -0.499 4.499 6 H 0.057 0.943 7 C -0.173 4.173 8 N -0.514 5.514 9 Si 0.794 3.206 10 H -0.178 1.178 11 H -0.210 1.210 12 H -0.178 1.178 13 C -0.410 4.410 14 S 0.323 5.677 15 C -0.326 4.326 16 C -0.144 4.144 17 C -0.084 4.084 18 H 0.092 0.908 19 H 0.117 0.883 20 H 0.106 0.894 21 H 0.171 0.829 22 H 0.096 0.904 23 H 0.223 0.777 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.993 -9.477 -1.226 13.827 hybrid contribution -1.298 1.078 -0.208 1.700 sum -11.291 -8.399 -1.434 14.145 Atomic orbital electron populations 1.22135 0.75779 1.05108 1.03484 1.43290 1.06125 1.02377 1.61855 1.21689 0.89578 0.90422 1.24567 1.17897 0.92022 0.88298 1.00091 1.18508 0.94554 0.94424 1.42422 0.94314 1.26606 1.00511 0.95452 0.94702 1.69849 1.36265 1.04741 1.40531 0.85492 0.78195 0.77542 0.79347 1.17771 1.21008 1.17760 1.24053 0.96562 0.98274 1.22142 1.83397 1.09919 0.94867 1.79524 1.25480 0.93525 1.03863 1.09778 1.19163 1.00952 0.87933 1.06378 1.18711 0.88709 0.89619 1.11312 0.90832 0.88299 0.89443 0.82909 0.90380 0.77730 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 11.06 127.77 1.41 3.43 14 2 N -0.45 -18.47 3.19 -536.48 -1.71 -20.18 14 3 C -0.14 -6.56 8.71 84.38 0.73 -5.82 14 4 C 0.03 1.48 5.68 -19.93 -0.11 1.37 14 5 C -0.47 -28.78 9.94 23.31 0.23 -28.55 14 6 H 0.04 2.62 8.06 -2.91 -0.02 2.59 14 7 C 0.04 2.09 5.50 85.12 0.47 2.56 14 8 N -0.88 -52.67 13.94 21.77 0.30 -52.36 14 9 Si 0.97 44.67 24.53 68.60 1.68 46.36 14 10 H -0.25 -10.55 6.69 99.48 0.67 -9.88 14 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 14 12 H -0.25 -11.80 6.56 99.48 0.65 -11.15 14 13 C -0.29 -14.29 7.49 24.45 0.18 -14.10 14 14 S 0.06 2.62 23.31 -56.49 -1.32 1.30 14 15 C -0.19 -5.73 11.15 66.64 0.74 -4.99 14 16 C -0.11 -3.52 10.17 21.55 0.22 -3.30 14 17 C 0.03 1.33 7.16 38.04 0.27 1.60 14 18 H 0.07 1.71 8.14 -2.38 -0.02 1.69 14 19 H 0.10 2.05 8.14 -2.39 -0.02 2.03 14 20 H 0.09 2.06 8.13 -2.38 -0.02 2.04 14 21 H 0.15 7.03 4.17 -2.91 -0.01 7.02 14 22 H 0.29 15.39 8.30 -92.71 -0.77 14.62 14 23 H 0.21 4.09 8.06 -2.91 -0.02 4.07 14 24 H 0.17 3.78 8.06 -2.91 -0.02 3.76 14 Total: -1.00 -71.81 223.25 4.23 -67.58 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.11 Total: 5.12 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 4.15 Total: -47.81 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.41 Total: -72.55 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.68 Total: 46.36 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.32 Total: 1.30 kcal Total: -71.81 4.23 -67.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260398514.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.243 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds