Wall clock time and date at job start Mon Mar 30 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36999 * 125.03827 * 2 1 4 4 C 1.33850 * 109.62874 * 180.16830 * 3 2 1 5 5 C 1.48101 * 106.85880 * 359.59822 * 4 3 2 6 6 C 1.39260 * 140.78123 * 180.24236 * 5 4 3 7 7 C 1.37219 * 114.74415 * 179.97438 * 6 5 4 8 8 C 1.39923 * 124.94595 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99890 * 359.96014 * 8 7 6 10 10 C 1.39961 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.30943 * 119.99718 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47032 * 90.00078 * 12 10 8 14 14 H 1.48503 * 109.47042 * 210.00193 * 12 10 8 15 15 H 1.48499 * 109.47081 * 330.00205 * 12 10 8 16 16 S 1.75557 * 110.10951 * 0.02562 * 7 6 5 17 17 C 1.37242 * 125.03253 * 179.71783 * 2 1 3 18 18 H 1.09003 * 109.46880 * 270.28234 * 1 2 3 19 19 H 1.08999 * 109.46582 * 30.28158 * 1 2 3 20 20 H 1.08997 * 109.47110 * 150.28102 * 1 2 3 21 21 H 1.07998 * 125.18502 * 0.02562 * 3 2 1 22 22 H 1.08002 * 126.57286 * 179.87265 * 4 3 2 23 23 H 1.07996 * 122.63008 * 0.02562 * 6 5 4 24 24 H 0.97006 * 119.99652 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2515 1.1217 0.0000 4 6 3.5419 0.7660 -0.0037 5 6 3.5794 -0.7145 0.0036 6 6 4.4870 -1.7707 0.0089 7 6 3.9160 -3.0185 0.0156 8 6 4.6255 -4.2245 0.0222 9 1 5.7055 -4.2157 0.0216 10 6 3.9357 -5.4422 0.0294 11 7 2.6263 -5.4529 0.0304 12 14 4.8829 -7.0523 0.0374 13 1 5.1349 -7.4712 1.4396 14 1 4.0883 -8.0975 -0.6564 15 1 6.1784 -6.8679 -0.6645 16 16 2.1658 -2.8814 0.0148 17 6 2.2528 -1.1238 0.0055 18 1 -0.3633 0.0051 1.0277 19 1 -0.3632 0.8875 -0.5182 20 1 -0.3633 -0.8925 -0.5094 21 1 1.8861 2.1380 0.0004 22 1 4.3928 1.4312 -0.0066 23 1 5.5563 -1.6197 0.0085 24 1 2.1481 -6.2969 0.0357 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260732240.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:23 Heat of formation + Delta-G solvation = 33.763894 kcal Electronic energy + Delta-G solvation = -10889.895262 eV Core-core repulsion = 8894.181999 eV Total energy + Delta-G solvation = -1995.713263 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 207.041 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.14944 -36.79124 -34.98892 -32.35643 -29.80063 -27.61962 -25.76420 -22.83583 -21.43749 -19.86322 -19.14331 -17.79754 -16.81150 -15.90192 -15.45953 -15.03804 -14.88833 -13.86594 -13.62969 -13.58221 -13.29609 -13.01500 -12.74585 -12.56469 -11.99837 -11.93717 -11.81014 -10.94468 -10.92700 -9.68368 -8.80922 -8.78570 -8.04095 -6.29746 0.92690 1.16749 1.38975 1.52390 1.55560 1.67838 1.98785 2.21000 2.52776 2.62071 3.22251 4.13109 4.26888 4.49328 4.67256 4.74244 4.95758 5.08614 5.25471 5.37207 5.77529 5.94312 6.16736 6.30556 6.37903 6.62407 6.76359 6.92855 8.14815 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.066778 B = 0.009974 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.199320 B = 2806.747714 C = 3210.801718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.452 5.452 3 C 0.029 3.971 4 C -0.243 4.243 5 C -0.120 4.120 6 C -0.355 4.355 7 C 0.004 3.996 8 C -0.441 4.441 9 H 0.091 0.909 10 C 0.017 3.983 11 N -0.828 5.828 12 Si 1.012 2.988 13 H -0.259 1.259 14 H -0.259 1.259 15 H -0.258 1.258 16 S 0.176 5.824 17 C -0.188 4.188 18 H 0.072 0.928 19 H 0.112 0.888 20 H 0.067 0.933 21 H 0.205 0.795 22 H 0.142 0.858 23 H 0.090 0.910 24 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 3.240 -0.086 5.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.136 5.136 3 C -0.100 4.100 4 C -0.271 4.271 5 C -0.132 4.132 6 C -0.383 4.383 7 C -0.114 4.114 8 C -0.476 4.476 9 H 0.109 0.891 10 C -0.197 4.197 11 N -0.457 5.457 12 Si 0.830 3.170 13 H -0.183 1.183 14 H -0.183 1.183 15 H -0.182 1.182 16 S 0.428 5.572 17 C -0.407 4.407 18 H 0.091 0.909 19 H 0.130 0.870 20 H 0.086 0.914 21 H 0.222 0.778 22 H 0.160 0.840 23 H 0.108 0.892 24 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.538 2.114 -0.088 6.872 hybrid contribution 1.762 0.468 0.026 1.823 sum -4.777 2.582 -0.062 5.430 Atomic orbital electron populations 1.22082 0.76136 1.04711 1.03349 1.43222 1.06053 1.02522 1.61801 1.22038 0.89556 0.91627 1.06818 1.21744 0.97137 0.91190 1.16999 1.19576 0.92129 0.94564 1.06974 1.19082 0.97001 0.90671 1.31517 1.21628 0.94855 0.96235 0.98726 1.19320 0.95452 0.89560 1.43218 0.89055 1.27091 0.95954 1.05381 0.91275 1.68532 1.09021 1.31470 1.36681 0.84722 0.78503 0.73970 0.79773 1.18315 1.18346 1.18182 1.84221 1.05424 0.87198 1.80355 1.25039 0.94204 0.97669 1.23770 0.90932 0.86993 0.91447 0.77790 0.83992 0.89214 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 11.08 127.77 1.42 3.62 14 2 N -0.45 -18.25 3.17 -540.82 -1.71 -19.96 14 3 C 0.03 1.07 11.30 82.89 0.94 2.01 14 4 C -0.24 -10.68 11.14 23.89 0.27 -10.41 14 5 C -0.12 -6.54 6.80 -20.27 -0.14 -6.68 14 6 C -0.35 -20.73 10.20 22.28 0.23 -20.50 14 7 C 0.00 0.26 6.13 22.44 0.14 0.40 14 8 C -0.44 -24.47 9.26 23.10 0.21 -24.25 14 9 H 0.09 4.88 7.85 -2.91 -0.02 4.86 14 10 C 0.02 0.85 5.50 85.24 0.47 1.32 14 11 N -0.83 -41.60 10.60 21.84 0.23 -41.37 14 12 Si 1.01 37.14 29.56 68.60 2.03 39.17 14 13 H -0.26 -9.13 7.11 99.48 0.71 -8.42 14 14 H -0.26 -8.83 7.11 99.48 0.71 -8.12 14 15 H -0.26 -9.34 7.11 99.48 0.71 -8.63 14 16 S 0.18 9.39 20.15 -56.49 -1.14 8.25 14 17 C -0.19 -9.62 7.91 83.99 0.66 -8.95 14 18 H 0.07 1.84 8.14 -2.39 -0.02 1.82 14 19 H 0.11 2.22 8.14 -2.39 -0.02 2.20 14 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 14 21 H 0.21 4.97 8.06 -2.91 -0.02 4.95 14 22 H 0.14 5.47 8.06 -2.91 -0.02 5.45 14 23 H 0.09 5.14 8.06 -2.91 -0.02 5.12 14 24 H 0.31 13.64 8.30 -92.70 -0.77 12.87 14 Total: -1.00 -68.12 228.84 4.80 -63.32 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.20 Total: 14.04 kcal Atomic # 6 Polarization: -67.65 SS G_CDS: 4.19 Total: -63.46 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -1.48 Total: -61.33 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 9.39 SS G_CDS: -1.14 Total: 8.25 kcal Total: -68.12 4.80 -63.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732240.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.083 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds