Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39044 * 120.10587 * 2 1 4 4 N 1.31562 * 121.50749 * 179.97438 * 3 2 1 5 5 C 1.32634 * 121.75047 * 0.02562 * 4 3 2 6 6 C 1.47623 * 119.98245 * 180.02562 * 5 4 3 7 7 O 1.21496 * 119.99936 * 185.19417 * 6 5 4 8 8 O 1.34780 * 120.00188 * 5.19024 * 6 5 4 9 9 C 1.41810 * 120.03410 * 0.02562 * 5 4 3 10 10 C 1.40894 * 120.72452 * 180.02562 * 9 5 4 11 11 H 1.08000 * 119.99947 * 27.88354 * 10 9 5 12 12 C 1.40310 * 120.00083 * 207.89069 * 10 9 5 13 13 N 1.30607 * 120.00066 * 14.04373 * 12 10 9 14 14 Si 1.86798 * 119.99978 * 194.04268 * 12 10 9 15 15 H 1.48496 * 109.47367 * 89.99967 * 14 12 10 16 16 H 1.48502 * 109.46988 * 210.00273 * 14 12 10 17 17 H 1.48502 * 109.47175 * 329.99659 * 14 12 10 18 18 C 1.36858 * 120.11173 * 179.72880 * 2 1 3 19 19 H 1.08997 * 109.47005 * 89.99714 * 1 2 3 20 20 H 1.09004 * 109.46719 * 209.99709 * 1 2 3 21 21 H 1.09003 * 109.46895 * 329.99743 * 1 2 3 22 22 H 1.07991 * 119.25086 * 0.02562 * 3 2 1 23 23 H 0.96700 * 117.00350 * 180.02562 * 8 6 5 24 24 H 0.97000 * 120.00093 * 174.96010 * 13 12 10 25 25 H 1.08001 * 120.81104 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2045 1.2029 0.0000 4 7 3.5197 1.2350 0.0005 5 6 4.2450 0.1246 0.0005 6 6 5.7190 0.2062 0.0017 7 8 6.3836 -0.8064 -0.0936 8 8 6.3276 1.4041 0.1083 9 6 3.6054 -1.1410 -0.0005 10 6 4.3616 -2.3298 0.0000 11 1 5.3485 -2.3418 0.4386 12 6 3.8326 -3.4980 -0.5693 13 7 2.7762 -3.4312 -1.3343 14 14 4.6395 -5.1489 -0.2332 15 1 4.0314 -5.7601 0.9759 16 1 4.4341 -6.0465 -1.3982 17 1 6.0944 -4.9525 -0.0101 18 6 2.1937 -1.1839 0.0056 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6541 2.1320 0.0004 23 1 7.2946 1.4072 0.1040 24 1 2.4537 -4.2265 -1.7865 25 1 1.6688 -2.1277 0.0105 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260771161.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = -75.511382 kcal Electronic energy + Delta-G solvation = -13123.777907 eV Core-core repulsion = 10680.573241 eV Total energy + Delta-G solvation = -2443.204666 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.25142 -37.93983 -35.06110 -34.18076 -32.42989 -30.51663 -26.80955 -25.96148 -22.67339 -21.75385 -19.88578 -17.43012 -17.07943 -16.04132 -15.60480 -14.66213 -14.47022 -13.70353 -13.24838 -13.03287 -12.43376 -12.00416 -11.77516 -11.69092 -11.48996 -11.37397 -11.12666 -10.77682 -10.45504 -10.28288 -9.60543 -9.01665 -8.35652 -8.12776 -7.67385 -7.07999 -4.70209 2.05634 2.69232 2.95221 3.02233 3.11669 3.74902 3.77449 4.22685 4.47191 5.45855 5.78156 5.90932 5.93881 6.25891 6.39503 6.51382 6.67776 6.84107 6.87953 7.06925 7.46793 7.56471 7.66101 7.81797 8.34831 8.45724 8.52000 9.03809 9.50848 9.80261 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.015806 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.996817 B = 1771.034279 C = 2833.503747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.110 4.110 3 C -0.027 4.027 4 N -0.414 5.414 5 C -0.080 4.080 6 C 0.539 3.461 7 O -0.526 6.526 8 O -0.517 6.517 9 C 0.101 3.899 10 C -0.400 4.400 11 H 0.118 0.882 12 C 0.067 3.933 13 N -0.771 5.771 14 Si 0.923 3.077 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.254 1.254 18 C -0.118 4.118 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.126 0.874 23 H 0.388 0.612 24 H 0.289 0.711 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 0.247 1.478 2.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.195 4.195 4 N -0.123 5.123 5 C -0.214 4.214 6 C 0.387 3.613 7 O -0.417 6.417 8 O -0.326 6.326 9 C 0.095 3.905 10 C -0.426 4.426 11 H 0.136 0.864 12 C -0.155 4.155 13 N -0.394 5.394 14 Si 0.746 3.254 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.177 1.177 18 C -0.144 4.144 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.144 0.856 23 H 0.243 0.757 24 H 0.101 0.899 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.383 0.567 1.346 2.012 hybrid contribution 0.393 -1.497 -0.111 1.552 sum -0.990 -0.930 1.235 1.836 Atomic orbital electron populations 1.20615 0.92573 1.01297 1.01231 1.20429 0.95690 0.94938 1.00223 1.21633 0.89364 0.95757 1.12736 1.66929 1.07723 1.31551 1.06090 1.19360 0.88459 0.89739 1.23815 1.20661 0.88521 0.79597 0.72486 1.90746 1.66223 1.36018 1.48697 1.84785 1.25755 1.35671 1.86432 1.18156 0.92331 0.91962 0.88077 1.20561 1.03198 0.91499 1.27360 0.86411 1.26357 0.93669 1.02222 0.93228 1.69677 1.18795 1.32469 1.18499 0.86038 0.81236 0.79051 0.79073 1.18827 1.19867 1.17737 1.21356 0.93535 0.96983 1.02523 0.92096 0.92504 0.92557 0.85624 0.75680 0.89923 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 10.02 36.01 0.36 -1.34 15 2 C -0.11 -2.45 5.86 -104.82 -0.61 -3.06 15 3 C -0.03 -0.61 10.84 -17.37 -0.19 -0.80 15 4 N -0.41 -10.55 10.12 -9.23 -0.09 -10.64 15 5 C -0.08 -2.14 6.81 -82.33 -0.56 -2.70 15 6 C 0.54 13.44 8.28 34.56 0.29 13.73 15 7 O -0.53 -13.77 14.26 -19.26 -0.27 -14.04 15 8 O -0.52 -10.75 13.26 -40.71 -0.54 -11.29 15 9 C 0.10 2.71 5.57 -106.39 -0.59 2.12 15 10 C -0.40 -10.62 7.93 -37.80 -0.30 -10.92 15 11 H 0.12 3.22 5.57 -52.49 -0.29 2.92 15 12 C 0.07 1.63 5.22 -17.29 -0.09 1.54 15 13 N -0.77 -18.71 11.02 55.57 0.61 -18.10 15 14 Si 0.92 18.22 29.59 -169.99 -5.03 13.19 15 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 17 H -0.25 -5.15 7.11 56.52 0.40 -4.74 15 18 C -0.12 -2.93 8.37 -38.94 -0.33 -3.25 15 19 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 20 H 0.06 0.91 8.08 -51.93 -0.42 0.49 15 21 H 0.06 0.83 8.09 -51.93 -0.42 0.41 15 22 H 0.13 2.46 8.06 -52.49 -0.42 2.04 15 23 H 0.39 5.74 9.11 45.56 0.42 6.15 15 24 H 0.29 6.28 8.30 -40.82 -0.34 5.94 15 25 H 0.13 3.20 6.42 -52.49 -0.34 2.86 15 LS Contribution 230.24 15.07 3.47 3.47 Total: -1.00 -29.98 230.24 -4.91 -34.89 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -1.03 Total: 7.21 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.03 Total: -4.69 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.52 Total: -28.74 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.81 Total: -25.34 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.98 -4.91 -34.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260771161.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.620 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds