Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39044 * 120.10587 * 2 1 4 4 N 1.31562 * 121.50749 * 179.97438 * 3 2 1 5 5 C 1.32634 * 121.75047 * 0.02562 * 4 3 2 6 6 C 1.47623 * 119.98245 * 180.02562 * 5 4 3 7 7 O 1.21496 * 119.99936 * 185.19417 * 6 5 4 8 8 O 1.34780 * 120.00188 * 5.19024 * 6 5 4 9 9 C 1.41810 * 120.03410 * 0.02562 * 5 4 3 10 10 C 1.40894 * 120.72452 * 180.02562 * 9 5 4 11 11 H 1.08000 * 119.99947 * 27.88354 * 10 9 5 12 12 C 1.40310 * 120.00083 * 207.89069 * 10 9 5 13 13 N 1.30607 * 120.00066 * 14.04373 * 12 10 9 14 14 Si 1.86798 * 119.99978 * 194.04268 * 12 10 9 15 15 H 1.48496 * 109.47367 * 89.99967 * 14 12 10 16 16 H 1.48502 * 109.46988 * 210.00273 * 14 12 10 17 17 H 1.48502 * 109.47175 * 329.99659 * 14 12 10 18 18 C 1.36858 * 120.11173 * 179.72880 * 2 1 3 19 19 H 1.08997 * 109.47005 * 89.99714 * 1 2 3 20 20 H 1.09004 * 109.46719 * 209.99709 * 1 2 3 21 21 H 1.09003 * 109.46895 * 329.99743 * 1 2 3 22 22 H 1.07991 * 119.25086 * 0.02562 * 3 2 1 23 23 H 0.96700 * 117.00350 * 180.02562 * 8 6 5 24 24 H 0.97000 * 120.00093 * 174.96010 * 13 12 10 25 25 H 1.08001 * 120.81104 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2045 1.2029 0.0000 4 7 3.5197 1.2350 0.0005 5 6 4.2450 0.1246 0.0005 6 6 5.7190 0.2062 0.0017 7 8 6.3836 -0.8064 -0.0936 8 8 6.3276 1.4041 0.1083 9 6 3.6054 -1.1410 -0.0005 10 6 4.3616 -2.3298 0.0000 11 1 5.3485 -2.3418 0.4386 12 6 3.8326 -3.4980 -0.5693 13 7 2.7762 -3.4312 -1.3343 14 14 4.6395 -5.1489 -0.2332 15 1 4.0314 -5.7601 0.9759 16 1 4.4341 -6.0465 -1.3982 17 1 6.0944 -4.9525 -0.0101 18 6 2.1937 -1.1839 0.0056 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6541 2.1320 0.0004 23 1 7.2946 1.4072 0.1040 24 1 2.4537 -4.2265 -1.7865 25 1 1.6688 -2.1277 0.0105 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260771161.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = -96.197990 kcal Electronic energy + Delta-G solvation = -13124.674946 eV Core-core repulsion = 10680.573241 eV Total energy + Delta-G solvation = -2444.101705 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11228 -39.77545 -36.88185 -36.02830 -34.14217 -32.40056 -28.49649 -27.79681 -24.45766 -23.60729 -21.70689 -19.32052 -18.91861 -17.88886 -17.38620 -16.43296 -16.33818 -15.38927 -15.00069 -14.63454 -14.14863 -13.78224 -13.50746 -13.23787 -13.19171 -13.07950 -12.79214 -12.42123 -12.24944 -12.00052 -11.38318 -10.91169 -10.23509 -9.98259 -9.52106 -8.88598 -6.64610 0.18401 0.90150 1.33864 1.47353 1.49723 1.88667 2.13777 2.50308 2.61953 3.56992 4.04321 4.32533 4.49796 4.64151 4.84791 4.95359 4.99684 5.04586 5.20728 5.32946 5.70962 5.73886 5.83856 6.00651 6.44343 6.52464 6.63828 7.26304 7.63980 8.02705 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.015806 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.996817 B = 1771.034279 C = 2833.503747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.103 4.103 3 C -0.026 4.026 4 N -0.431 5.431 5 C -0.121 4.121 6 C 0.538 3.462 7 O -0.550 6.550 8 O -0.509 6.509 9 C 0.074 3.926 10 C -0.432 4.432 11 H 0.100 0.900 12 C 0.033 3.967 13 N -0.790 5.790 14 Si 0.990 3.010 15 H -0.250 1.250 16 H -0.256 1.256 17 H -0.267 1.267 18 C -0.139 4.139 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.164 0.836 23 H 0.415 0.585 24 H 0.302 0.698 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 0.149 1.464 3.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.195 4.195 4 N -0.141 5.141 5 C -0.252 4.252 6 C 0.387 3.613 7 O -0.443 6.443 8 O -0.321 6.321 9 C 0.068 3.932 10 C -0.458 4.458 11 H 0.118 0.882 12 C -0.187 4.187 13 N -0.414 5.414 14 Si 0.810 3.190 15 H -0.174 1.174 16 H -0.179 1.179 17 H -0.191 1.191 18 C -0.165 4.165 19 H 0.094 0.906 20 H 0.084 0.916 21 H 0.105 0.895 22 H 0.181 0.819 23 H 0.274 0.726 24 H 0.114 0.886 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.625 0.501 1.329 2.985 hybrid contribution 0.709 -1.323 -0.121 1.506 sum -1.916 -0.822 1.208 2.410 Atomic orbital electron populations 1.20685 0.88531 1.03294 1.02723 1.20953 0.98608 0.93667 0.97350 1.22390 0.88942 0.97603 1.10566 1.66967 1.08992 1.31223 1.06892 1.19665 0.89597 0.90210 1.25765 1.20564 0.88397 0.80122 0.72201 1.90720 1.66648 1.36953 1.49953 1.84695 1.28160 1.33554 1.85712 1.18548 0.93677 0.92431 0.88512 1.20604 1.03039 0.93023 1.29125 0.88182 1.27112 0.94269 1.04905 0.92394 1.69666 1.19323 1.34033 1.18333 0.85072 0.79270 0.74773 0.79930 1.17363 1.17933 1.19141 1.21433 0.92983 0.98003 1.04114 0.90607 0.91622 0.89532 0.81895 0.72644 0.88637 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 10.02 71.24 0.71 -2.19 15 2 C -0.10 -4.41 5.86 -19.99 -0.12 -4.52 15 3 C -0.03 -1.13 10.84 84.93 0.92 -0.21 15 4 N -0.43 -21.82 10.12 -183.10 -1.85 -23.68 15 5 C -0.12 -6.57 6.81 42.39 0.29 -6.28 15 6 C 0.54 27.41 8.28 70.30 0.58 27.99 15 7 O -0.55 -29.67 14.26 19.85 0.28 -29.39 15 8 O -0.51 -21.06 13.26 -56.91 -0.75 -21.81 15 9 C 0.07 4.09 5.57 -21.01 -0.12 3.97 15 10 C -0.43 -23.65 7.93 23.42 0.19 -23.46 15 11 H 0.10 5.72 5.57 -2.91 -0.02 5.70 15 12 C 0.03 1.62 5.22 85.38 0.45 2.06 15 13 N -0.79 -38.24 11.02 21.89 0.24 -38.00 15 14 Si 0.99 37.19 29.59 68.60 2.03 39.22 15 15 H -0.25 -8.76 7.11 99.48 0.71 -8.05 15 16 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 17 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 18 C -0.14 -6.92 8.37 22.68 0.19 -6.73 15 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.06 1.90 8.08 -2.38 -0.02 1.88 15 21 H 0.09 2.14 8.09 -2.39 -0.02 2.12 15 22 H 0.16 5.78 8.06 -2.91 -0.02 5.75 15 23 H 0.41 11.89 9.11 -74.06 -0.67 11.22 15 24 H 0.30 12.83 8.30 -92.71 -0.77 12.07 15 25 H 0.13 6.24 6.42 -2.91 -0.02 6.22 15 Total: -1.00 -65.46 230.24 3.60 -61.87 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.56 Total: 21.17 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 3.09 Total: -9.37 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -1.61 Total: -61.67 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.47 Total: -51.20 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -65.46 3.60 -61.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260771161.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.333 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds