Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30044 * 1 3 3 Si 1.86802 * 119.99404 * 2 1 4 4 H 1.48498 * 109.47063 * 239.99180 * 3 2 1 5 5 H 1.48499 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46894 * 119.99890 * 3 2 1 7 7 C 1.41389 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.39617 * 120.00459 * 0.02562 * 7 2 1 10 10 C 1.39921 * 127.12517 * 359.68068 * 9 7 2 11 11 C 1.46311 * 106.20017 * 180.25954 * 10 9 7 12 12 O 1.21653 * 125.43594 * 179.97438 * 11 10 9 13 13 N 1.34288 * 109.11972 * 0.02562 * 11 10 9 14 14 C 1.46499 * 124.63430 * 180.02562 * 13 11 10 15 15 C 1.53009 * 117.50027 * 8.72034 * 14 13 11 16 16 C 1.53003 * 117.49981 * 300.05983 * 14 13 11 17 17 C 1.34409 * 110.72861 * 359.97438 * 13 11 10 18 18 O 1.21426 * 125.89721 * 179.97438 * 17 13 11 19 19 H 0.96998 * 120.00745 * 0.02562 * 1 2 3 20 20 H 1.07991 * 126.90122 * 0.26689 * 10 9 7 21 21 H 1.08999 * 115.55097 * 154.38968 * 14 13 11 22 22 H 1.08997 * 117.49683 * 359.97438 * 15 14 13 23 23 H 1.08999 * 117.50034 * 145.02333 * 15 14 13 24 24 H 1.09002 * 117.50026 * 214.98094 * 16 14 13 25 25 H 1.09000 * 117.50086 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3004 0.0000 0.0000 3 14 2.2343 1.6179 0.0000 4 1 3.0882 1.6965 -1.2124 5 1 1.2693 2.7465 -0.0006 6 1 3.0880 1.6966 1.2126 7 6 2.0074 -1.2245 0.0005 8 1 3.0874 -1.2244 0.0010 9 6 1.3094 -2.4336 0.0005 10 6 -0.0789 -2.6073 0.0063 11 6 -0.3095 -4.0522 0.0100 12 8 -1.3995 -4.5924 0.0157 13 7 0.8741 -4.6865 0.0072 14 6 1.0385 -6.1422 0.0090 15 6 -0.2158 -6.9952 -0.1914 16 6 0.4461 -6.9187 1.1868 17 6 1.8872 -3.8032 0.0013 18 8 3.0702 -4.0768 -0.0019 19 1 -0.4851 0.8400 -0.0004 20 1 -0.8295 -1.8310 0.0076 21 1 1.9711 -6.5105 -0.4185 22 1 -1.1634 -6.4732 -0.3241 23 1 -0.1084 -7.9248 -0.7503 24 1 0.9888 -7.7980 1.5339 25 1 -0.0656 -6.3464 1.9605 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261035230.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = -19.857545 kcal Electronic energy + Delta-G solvation = -13131.754436 eV Core-core repulsion = 10690.963102 eV Total energy + Delta-G solvation = -2440.791334 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60761 -37.27836 -35.98767 -34.89477 -33.84238 -30.29113 -26.61640 -23.44057 -22.12680 -22.00967 -20.25858 -18.29704 -17.23652 -16.29251 -15.61896 -15.08939 -14.48480 -14.02677 -13.72063 -13.06590 -12.70457 -12.50546 -12.24775 -11.68012 -11.66167 -11.09736 -10.95233 -10.80234 -10.54244 -10.15352 -10.05153 -9.13889 -8.58853 -8.43863 -8.07056 -7.18464 -4.99182 1.78302 2.80937 2.82652 2.84988 3.50335 3.64813 3.78752 4.08466 4.59993 4.98970 5.17928 5.30549 5.44869 5.66161 5.97628 6.04040 6.34403 6.41916 6.64135 6.66580 6.95153 7.19236 7.66263 7.92451 8.15773 8.32307 8.49581 8.78192 9.34237 9.56438 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.058989 B = 0.009600 C = 0.008458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.550250 B = 2916.033609 C = 3309.691798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.049 3.951 3 Si 0.935 3.065 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.325 4.325 8 H 0.098 0.902 9 C 0.014 3.986 10 C -0.425 4.425 11 C 0.535 3.465 12 O -0.557 6.557 13 N -0.569 5.569 14 C 0.069 3.931 15 C -0.187 4.187 16 C -0.189 4.189 17 C 0.555 3.445 18 O -0.514 6.514 19 H 0.296 0.704 20 H 0.172 0.828 21 H 0.126 0.874 22 H 0.134 0.866 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -1.147 0.204 2.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.350 4.350 8 H 0.116 0.884 9 C 0.006 3.994 10 C -0.452 4.452 11 C 0.343 3.657 12 O -0.442 6.442 13 N -0.310 5.310 14 C -0.035 4.035 15 C -0.225 4.225 16 C -0.228 4.228 17 C 0.347 3.653 18 O -0.390 6.390 19 H 0.108 0.892 20 H 0.189 0.811 21 H 0.144 0.856 22 H 0.152 0.848 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.782 -1.484 0.200 2.328 hybrid contribution 0.358 0.457 0.034 0.581 sum 2.140 -1.027 0.234 2.385 Atomic orbital electron populations 1.69397 1.08475 1.30981 1.24781 1.26517 0.95163 1.02495 0.93537 0.85883 0.79906 0.77714 0.80803 1.18057 1.19444 1.18055 1.19728 0.95771 0.88998 1.30482 0.88431 1.19979 0.94393 0.89278 0.95707 1.23801 0.95918 0.90441 1.35050 1.19434 0.81437 0.90060 0.74746 1.90470 1.25998 1.74342 1.53400 1.46122 1.10678 1.05107 1.69095 1.21532 0.98853 0.79176 1.03913 1.23729 0.99429 1.00648 0.98650 1.23272 1.04490 1.02315 0.92684 1.20074 0.84262 0.88305 0.72629 1.90592 1.16121 1.85052 1.47223 0.89171 0.81135 0.85607 0.84810 0.88970 0.88581 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -16.36 10.37 55.63 0.58 -15.79 15 2 C 0.05 1.09 5.52 -17.11 -0.09 0.99 15 3 Si 0.94 16.02 29.57 -169.99 -5.03 10.99 15 4 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 5 H -0.27 -4.45 7.11 56.52 0.40 -4.04 15 6 H -0.26 -4.36 7.11 56.52 0.40 -3.95 15 7 C -0.32 -7.87 9.44 -37.87 -0.36 -8.23 15 8 H 0.10 2.23 7.87 -52.49 -0.41 1.82 15 9 C 0.01 0.36 6.13 -104.45 -0.64 -0.28 15 10 C -0.42 -11.32 10.14 -35.71 -0.36 -11.69 15 11 C 0.54 13.93 7.78 -13.23 -0.10 13.83 15 12 O -0.56 -14.92 14.82 5.23 0.08 -14.84 15 13 N -0.57 -13.66 2.96 -110.80 -0.33 -13.99 15 14 C 0.07 1.38 6.62 -67.92 -0.45 0.93 15 15 C -0.19 -3.34 9.79 -26.69 -0.26 -3.61 15 16 C -0.19 -3.29 10.36 -26.69 -0.28 -3.57 15 17 C 0.56 14.06 8.03 -12.13 -0.10 13.96 15 18 O -0.51 -13.30 17.81 5.43 0.10 -13.21 15 19 H 0.30 5.93 8.28 -40.82 -0.34 5.60 15 20 H 0.17 4.68 5.86 -52.49 -0.31 4.37 15 21 H 0.13 2.30 8.14 -51.93 -0.42 1.88 15 22 H 0.13 2.79 5.35 -51.93 -0.28 2.51 15 23 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.10 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.09 1.80 8.14 -51.93 -0.42 1.38 15 LS Contribution 230.58 15.07 3.47 3.47 Total: -1.00 -27.99 230.58 -5.59 -33.58 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -1.82 Total: 7.44 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.64 Total: 2.33 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.25 Total: -29.78 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: 0.17 Total: -28.05 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.99 -5.59 -33.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035230.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.722 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds