Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 120.00020 * 2 1 4 4 H 1.48498 * 109.47088 * 239.99867 * 3 2 1 5 5 H 1.48493 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46683 * 120.00161 * 3 2 1 7 7 C 1.40111 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.41546 * 120.00002 * 359.97438 * 7 2 1 10 10 N 1.34185 * 120.74648 * 359.97438 * 9 7 2 11 11 C 1.31913 * 120.49989 * 180.02562 * 10 9 7 12 12 O 1.35448 * 118.97346 * 179.97438 * 11 10 9 13 13 N 1.32670 * 122.05396 * 0.02562 * 11 10 9 14 14 C 1.32198 * 121.06347 * 359.95948 * 13 11 10 15 15 C 1.38427 * 119.24684 * 0.04765 * 14 13 11 16 16 C 1.50841 * 108.46100 * 179.97438 * 15 14 13 17 17 N 1.48127 * 105.64038 * 342.67682 * 16 15 14 18 18 C 1.48108 * 103.90548 * 27.33015 * 17 16 15 19 19 H 0.97005 * 120.00039 * 359.97438 * 1 2 3 20 20 H 0.96704 * 113.99868 * 89.99704 * 12 11 10 21 21 H 1.08997 * 110.20983 * 223.63666 * 16 15 14 22 22 H 1.09004 * 110.28080 * 101.75710 * 16 15 14 23 23 H 1.00901 * 110.99867 * 146.70070 * 17 16 15 24 24 H 1.08999 * 110.19689 * 91.68750 * 18 17 16 25 25 H 1.08995 * 110.20213 * 213.56558 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0072 -1.2134 -0.0005 8 1 3.0873 -1.2135 -0.0010 9 6 1.2994 -2.4392 -0.0005 10 7 -0.0423 -2.4566 0.0005 11 6 -0.6970 -3.6019 0.0010 12 8 -2.0513 -3.5834 0.0026 13 7 -0.0703 -4.7712 0.0010 14 6 1.2501 -4.8374 -0.0003 15 6 1.9861 -3.6651 -0.0007 16 6 3.4518 -4.0213 -0.0015 17 7 3.5186 -5.4388 0.4231 18 6 2.2152 -5.9993 -0.0017 19 1 -0.4850 0.8401 0.0004 20 1 -2.4456 -3.5777 -0.8804 21 1 3.9929 -3.3909 0.7040 22 1 3.8676 -3.9080 -1.0028 23 1 4.2828 -5.9165 -0.0306 24 1 2.2954 -6.4208 -1.0037 25 1 1.8860 -6.7628 0.7032 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051747.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = -10.762635 kcal Electronic energy + Delta-G solvation = -13210.925636 eV Core-core repulsion = 10802.821438 eV Total energy + Delta-G solvation = -2408.104198 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55364 -38.89838 -37.16462 -35.74993 -33.48223 -31.19469 -28.82898 -28.44133 -24.69313 -23.21692 -22.10055 -19.85194 -19.13772 -18.29811 -17.05080 -16.74667 -16.25414 -15.48848 -15.03954 -14.66303 -14.07026 -13.86862 -13.75870 -13.16422 -12.95663 -12.90648 -12.71193 -12.49240 -11.98337 -11.58896 -11.14309 -10.66484 -10.13880 -9.45696 -9.23714 -8.43714 -6.84420 0.49390 0.85002 1.40687 1.55152 1.55239 2.17433 2.52294 2.73885 3.38389 3.48795 3.64252 4.08773 4.38474 4.48986 4.55559 4.68312 4.91298 5.01371 5.11078 5.25767 5.60410 5.67901 5.97694 6.31592 6.51583 6.61138 6.76987 7.08207 7.97119 8.27204 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.013227 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.745275 B = 2116.387004 C = 2972.693790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.019 3.981 3 Si 0.998 3.002 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.430 4.430 8 H 0.109 0.891 9 C 0.261 3.739 10 N -0.548 5.548 11 C 0.465 3.535 12 O -0.479 6.479 13 N -0.632 5.632 14 C 0.142 3.858 15 C -0.339 4.339 16 C 0.123 3.877 17 N -0.656 5.656 18 C 0.108 3.892 19 H 0.286 0.714 20 H 0.411 0.589 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.362 0.638 24 H 0.083 0.917 25 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -2.070 -3.141 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.205 4.205 3 Si 0.816 3.184 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.463 4.463 8 H 0.127 0.873 9 C 0.134 3.866 10 N -0.280 5.280 11 C 0.157 3.843 12 O -0.282 6.282 13 N -0.367 5.367 14 C 0.002 3.998 15 C -0.348 4.348 16 C -0.007 4.007 17 N -0.287 5.287 18 C -0.022 4.022 19 H 0.097 0.903 20 H 0.269 0.731 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.180 0.820 24 H 0.101 0.899 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.905 -1.856 -1.812 5.549 hybrid contribution 0.396 0.580 -1.391 1.559 sum 5.302 -1.276 -3.204 6.324 Atomic orbital electron populations 1.70180 1.09410 1.30231 1.26577 1.27274 0.95777 1.05335 0.92162 0.85025 0.78518 0.74226 0.80622 1.17413 1.19348 1.17874 1.20181 0.95518 0.89324 1.41249 0.87318 1.18508 0.86641 0.92957 0.88477 1.69068 1.09440 1.26563 1.22908 1.20607 0.85638 0.84798 0.93208 1.84546 1.13181 1.95740 1.34775 1.66736 1.10792 1.30002 1.29204 1.21860 0.88909 0.96766 0.92270 1.22084 0.98575 0.95472 1.18662 1.20710 0.90973 0.89902 0.99111 1.63498 1.03671 1.02628 1.58941 1.21133 0.87003 0.92814 1.01209 0.90283 0.73073 0.90378 0.92403 0.82004 0.89921 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.29 11.53 21.85 0.25 -39.04 15 2 C 0.02 0.92 5.50 85.32 0.47 1.39 15 3 Si 1.00 35.48 29.56 68.60 2.03 37.51 15 4 H -0.25 -8.38 7.11 99.48 0.71 -7.67 15 5 H -0.27 -9.21 7.11 99.48 0.71 -8.51 15 6 H -0.25 -8.73 7.11 99.48 0.71 -8.02 15 7 C -0.43 -22.15 9.12 23.54 0.21 -21.93 15 8 H 0.11 5.01 7.68 -2.91 -0.02 4.99 15 9 C 0.26 14.51 6.57 40.15 0.26 14.77 15 10 N -0.55 -31.97 8.09 -307.30 -2.49 -34.46 15 11 C 0.46 25.33 8.69 180.58 1.57 26.90 15 12 O -0.48 -22.77 13.64 -87.45 -1.19 -23.97 15 13 N -0.63 -32.80 10.45 -301.22 -3.15 -35.95 15 14 C 0.14 6.69 7.50 42.66 0.32 7.01 15 15 C -0.34 -16.50 6.18 -19.22 -0.12 -16.62 15 16 C 0.12 4.56 7.17 85.37 0.61 5.17 15 17 N -0.66 -20.60 7.72 -515.19 -3.98 -24.58 15 18 C 0.11 3.72 7.45 85.43 0.64 4.35 15 19 H 0.29 13.61 8.29 -92.70 -0.77 12.84 15 20 H 0.41 14.77 9.06 -74.05 -0.67 14.10 15 21 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.36 8.20 8.92 -89.69 -0.80 7.40 15 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 25 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -69.26 227.01 -4.78 -74.04 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.22 Total: 25.40 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 3.97 Total: 21.04 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -9.36 Total: -134.03 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -1.19 Total: -23.97 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -69.26 -4.78 -74.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051747.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.275 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds