Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31266 * 1 3 3 Si 1.86805 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47227 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.46722 * 29.99831 * 3 2 1 6 6 H 1.48504 * 109.47174 * 149.99626 * 3 2 1 7 7 C 1.39001 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00192 * 180.02562 * 7 2 1 9 9 N 1.37432 * 119.99583 * 0.02562 * 7 2 1 10 10 C 1.35315 * 126.86947 * 180.02562 * 9 7 2 11 11 N 1.30819 * 107.95867 * 180.02562 * 10 9 7 12 12 C 1.33368 * 109.87204 * 359.97438 * 11 10 9 13 13 C 1.50705 * 125.45167 * 180.02562 * 12 11 10 14 14 F 1.39904 * 109.46848 * 284.95394 * 13 12 11 15 15 F 1.39895 * 109.47175 * 44.95502 * 13 12 11 16 16 F 1.39896 * 109.46897 * 164.95684 * 13 12 11 17 17 N 1.30834 * 109.08921 * 359.97438 * 12 11 10 18 18 H 0.96995 * 119.99950 * 0.02562 * 1 2 3 19 19 H 1.07998 * 126.02435 * 359.74936 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2467 1.6178 0.0000 4 1 2.4942 2.0465 -1.4000 5 1 1.4441 2.6527 0.7000 6 1 3.5443 1.4402 0.7001 7 6 2.0077 -1.2037 -0.0005 8 1 3.0877 -1.2037 -0.0001 9 7 1.3206 -2.3939 -0.0016 10 6 1.8521 -3.6383 -0.0017 11 7 0.8661 -4.4981 -0.0035 12 6 -0.2999 -3.8507 -0.0039 13 6 -1.6601 -4.4997 -0.0052 14 9 -1.9334 -5.0070 -1.2800 15 9 -1.6796 -5.5434 0.9261 16 9 -2.6296 -3.5511 0.3371 17 7 -0.0738 -2.5620 -0.0019 18 1 -0.4850 0.8400 -0.0004 19 1 2.9048 -3.8793 -0.0049 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057892.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = -67.748310 kcal Electronic energy + Delta-G solvation = -13410.002413 eV Core-core repulsion = 10321.737296 eV Total energy + Delta-G solvation = -3088.265118 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.031 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.36655 -46.91027 -46.87589 -40.59291 -34.26691 -31.47578 -30.01067 -26.89624 -24.73631 -21.32282 -20.45136 -18.15597 -17.79335 -17.42282 -17.07845 -15.26711 -14.40402 -14.25969 -13.83363 -13.69669 -13.39795 -13.33600 -13.06323 -13.04487 -12.15719 -11.88741 -11.49463 -11.35296 -10.79399 -10.35494 -10.15743 -8.76757 -8.70684 -8.42345 -6.90293 -4.75319 2.74059 2.90206 2.97147 3.15232 3.23079 3.62445 3.72768 4.15607 4.60878 4.71704 4.98535 5.26105 5.92452 6.26576 6.79600 7.25524 7.52077 7.82622 8.35827 8.87735 9.41146 10.06023 Molecular weight = 207.03amu Principal moments of inertia in cm(-1) A = 0.058149 B = 0.010401 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.409549 B = 2691.487852 C = 2998.399423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.317 4.317 8 H 0.131 0.869 9 N -0.141 5.141 10 C 0.099 3.901 11 N -0.526 5.526 12 C 0.025 3.975 13 C 0.581 3.419 14 F -0.179 7.179 15 F -0.176 7.176 16 F -0.169 7.169 17 N -0.243 5.243 18 H 0.283 0.717 19 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -0.815 0.030 1.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.453 4.453 8 H 0.148 0.852 9 N 0.083 4.917 10 C -0.185 4.185 11 N -0.258 5.258 12 C -0.251 4.251 13 C 0.524 3.476 14 F -0.161 7.161 15 F -0.157 7.157 16 F -0.150 7.150 17 N -0.087 5.087 18 H 0.094 0.906 19 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.251 -0.630 0.036 0.680 hybrid contribution 0.502 0.717 -0.014 0.875 sum 0.754 0.087 0.022 0.759 Atomic orbital electron populations 1.70155 1.06448 1.29203 1.32361 1.25807 0.95846 1.00967 0.94815 0.85673 0.79439 0.78950 0.79325 1.19204 1.19764 1.18395 1.20241 0.92210 0.80289 1.52559 0.85193 1.46535 1.03152 1.06274 1.35766 1.25134 0.99035 0.80773 1.13523 1.69748 0.96454 1.34386 1.25193 1.23110 0.93069 0.91526 1.17350 1.16374 0.82653 0.75206 0.73319 1.93163 1.94542 1.87833 1.40553 1.93154 1.96807 1.59514 1.66258 1.93186 1.65070 1.64667 1.92075 1.78876 0.91407 1.12211 1.26240 0.90589 0.78435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.77 11.88 55.50 0.66 -19.11 13 2 C 0.05 1.10 5.50 -17.51 -0.10 1.00 13 3 Si 0.94 17.32 29.55 -169.99 -5.02 12.30 13 4 H -0.27 -4.85 7.11 56.52 0.40 -4.44 13 5 H -0.27 -5.01 7.11 56.52 0.40 -4.60 13 6 H -0.26 -4.54 7.11 56.52 0.40 -4.14 13 7 C -0.32 -7.73 10.29 -14.76 -0.15 -7.88 13 8 H 0.13 2.72 7.83 -52.49 -0.41 2.31 13 9 N -0.14 -3.71 3.74 -12.74 -0.05 -3.76 13 10 C 0.10 2.33 12.61 -89.86 -1.13 1.20 13 11 N -0.53 -13.29 11.19 -11.72 -0.13 -13.42 13 12 C 0.02 0.64 7.41 -156.64 -1.16 -0.52 13 13 C 0.58 13.22 3.57 36.01 0.13 13.35 13 14 F -0.18 -3.86 17.30 2.25 0.04 -3.82 13 15 F -0.18 -3.74 17.30 2.25 0.04 -3.70 13 16 F -0.17 -3.80 17.15 2.25 0.04 -3.76 13 17 N -0.24 -6.82 10.40 32.47 0.34 -6.49 13 18 H 0.28 6.72 8.31 -40.82 -0.34 6.38 13 19 H 0.20 3.67 8.06 -52.49 -0.42 3.25 13 LS Contribution 203.42 15.07 3.07 3.07 Total: -1.00 -29.40 203.42 -3.41 -32.80 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 0.03 Total: -1.25 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.41 Total: 7.14 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.82 Total: -42.78 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 0.12 Total: -11.29 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.02 Total: 12.30 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -29.40 -3.41 -32.80 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057892.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.948 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds