Wall clock time and date at job start Mon Mar 30 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48500 * 109.46909 * 239.99947 * 3 2 1 5 5 H 1.48492 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46478 * 120.00182 * 3 2 1 7 7 C 1.39986 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.39631 * 120.00065 * 359.97438 * 7 2 1 10 10 N 1.33480 * 126.52618 * 0.02562 * 9 7 2 11 11 N 1.28614 * 109.95357 * 179.97438 * 10 9 7 12 12 C 1.33278 * 109.99164 * 0.02562 * 11 10 9 13 13 C 1.39998 * 133.01037 * 179.97438 * 12 11 10 14 14 C 1.38059 * 119.15446 * 180.02562 * 13 12 11 15 15 F 1.35102 * 120.26524 * 180.02562 * 14 13 12 16 16 C 1.40395 * 119.47796 * 0.02562 * 14 13 12 17 17 C 1.35351 * 120.17050 * 359.97438 * 16 14 13 18 18 N 1.35966 * 120.68819 * 359.97438 * 17 16 14 19 19 H 0.97001 * 119.99669 * 359.97438 * 1 2 3 20 20 H 1.07994 * 120.42688 * 0.02562 * 13 12 11 21 21 H 1.07992 * 119.91735 * 180.02562 * 16 14 13 22 22 H 1.07998 * 119.65555 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2782 2.7464 0.0006 6 1 3.0968 1.6962 1.2125 7 6 2.0090 -1.2123 -0.0005 8 1 3.0890 -1.2124 -0.0001 9 6 1.3108 -2.4216 -0.0005 10 7 -0.0154 -2.5732 -0.0005 11 7 -0.3141 -3.8242 -0.0011 12 6 0.7983 -4.5583 -0.0009 13 6 1.0315 -5.9387 -0.0008 14 6 2.3324 -6.4010 -0.0001 15 9 2.5833 -7.7286 -0.0005 16 6 3.3927 -5.4808 0.0011 17 6 3.1394 -4.1512 0.0010 18 7 1.8609 -3.6883 -0.0008 19 1 -0.4850 0.8401 0.0004 20 1 0.2045 -6.6331 -0.0013 21 1 4.4130 -5.8346 0.0013 22 1 3.9613 -3.4506 0.0015 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259205.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:36 Heat of formation + Delta-G solvation = 48.772063 kcal Electronic energy + Delta-G solvation = -12697.196008 eV Core-core repulsion = 10168.213123 eV Total energy + Delta-G solvation = -2528.982885 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.37562 -41.56459 -36.59665 -33.99763 -32.31957 -29.97109 -28.69521 -25.61999 -23.26132 -21.87141 -21.07258 -17.91299 -17.22919 -16.52233 -15.83842 -15.35305 -15.08752 -14.50726 -14.23325 -13.64460 -13.17635 -12.65483 -11.65336 -11.50234 -11.49439 -11.12204 -10.95311 -10.53848 -10.09981 -10.02525 -9.37314 -8.79070 -8.33456 -7.25801 -6.88008 -4.70138 1.41541 2.11896 2.92690 2.94758 2.98169 3.59381 3.85904 3.90814 4.40030 4.65418 5.06235 5.08397 5.45600 5.64378 5.82147 6.28172 6.47413 6.61011 6.66202 6.92748 7.03274 7.38467 7.78001 7.90287 8.44861 8.54328 10.03910 10.30781 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.064397 B = 0.009317 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.695284 B = 3004.690631 C = 3429.543967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.072 3.928 3 Si 0.928 3.072 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.431 4.431 8 H 0.090 0.910 9 C 0.319 3.681 10 N -0.301 5.301 11 N -0.275 5.275 12 C 0.091 3.909 13 C -0.088 4.088 14 C 0.069 3.931 15 F -0.144 7.144 16 C -0.226 4.226 17 C 0.141 3.859 18 N -0.447 5.447 19 H 0.285 0.715 20 H 0.143 0.857 21 H 0.143 0.857 22 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 -3.108 0.003 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.154 4.154 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.108 0.892 9 C 0.082 3.918 10 N -0.148 5.148 11 N -0.121 5.121 12 C -0.156 4.156 13 C -0.111 4.111 14 C 0.043 3.957 15 F -0.123 7.123 16 C -0.250 4.250 17 C 0.015 3.985 18 N -0.135 5.135 19 H 0.096 0.904 20 H 0.160 0.840 21 H 0.161 0.839 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.335 -2.501 0.002 5.892 hybrid contribution 1.875 0.094 0.001 1.877 sum 7.209 -2.408 0.003 7.601 Atomic orbital electron populations 1.70016 1.07156 1.29524 1.28433 1.25864 0.95102 1.01045 0.93421 0.86037 0.79704 0.79164 0.79966 1.18720 1.19795 1.18727 1.18171 0.94305 0.87103 1.47403 0.89226 1.21717 0.89472 0.82677 0.97901 1.75736 1.07878 1.04885 1.26274 1.74781 1.21607 0.99544 1.16184 1.21016 0.85703 0.91331 1.17577 1.19945 0.95405 0.91909 1.03821 1.17339 0.93166 0.77041 1.08150 1.91416 1.95039 1.31409 1.94463 1.20281 0.99113 0.91208 1.14443 1.21188 0.86598 0.94958 0.95720 1.43844 1.05706 1.08789 1.55196 0.90351 0.83973 0.83930 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.07 11.93 55.55 0.66 -18.41 14 2 C 0.07 1.75 5.50 -17.29 -0.10 1.65 14 3 Si 0.93 17.39 29.56 -169.99 -5.03 12.37 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 7 C -0.43 -10.80 9.27 -38.41 -0.36 -11.16 14 8 H 0.09 1.98 7.85 -52.49 -0.41 1.57 14 9 C 0.32 8.64 7.59 -154.77 -1.17 7.46 14 10 N -0.30 -8.88 10.47 31.25 0.33 -8.55 14 11 N -0.28 -7.66 12.31 31.13 0.38 -7.28 14 12 C 0.09 2.23 7.89 -155.54 -1.23 1.00 14 13 C -0.09 -1.78 10.14 -38.99 -0.40 -2.17 14 14 C 0.07 1.26 7.38 -38.84 -0.29 0.97 14 15 F -0.14 -2.44 17.28 2.25 0.04 -2.40 14 16 C -0.23 -3.76 9.99 -39.80 -0.40 -4.16 14 17 C 0.14 2.63 10.86 -16.75 -0.18 2.45 14 18 N -0.45 -10.68 2.99 -62.06 -0.19 -10.86 14 19 H 0.29 6.70 8.30 -40.82 -0.34 6.36 14 20 H 0.14 2.54 8.06 -52.49 -0.42 2.12 14 21 H 0.14 1.85 8.06 -52.49 -0.42 1.42 14 22 H 0.16 2.41 8.06 -52.49 -0.42 1.98 14 LS Contribution 214.78 15.07 3.24 3.24 Total: -1.00 -30.33 214.78 -5.49 -35.82 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -0.81 Total: 0.03 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -4.11 Total: -3.95 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 1.19 Total: -45.10 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.33 -5.49 -35.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259205.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.588 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds