Wall clock time and date at job start Mon Mar 30 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48493 * 109.47540 * 274.99290 * 3 2 1 5 5 H 1.48503 * 109.47039 * 34.99384 * 3 2 1 6 6 H 1.48503 * 109.47075 * 154.99133 * 3 2 1 7 7 C 1.40061 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99834 * 186.31862 * 7 2 1 9 9 C 1.41579 * 119.99604 * 6.31919 * 7 2 1 10 10 N 1.33600 * 119.15906 * 173.64397 * 9 7 2 11 11 C 1.31668 * 120.62523 * 179.97438 * 10 9 7 12 12 C 1.39074 * 119.36005 * 359.97438 * 11 10 9 13 13 C 1.39422 * 118.92546 * 0.06016 * 12 11 10 14 14 N 1.38525 * 120.56348 * 179.97438 * 13 12 11 15 15 N 1.32765 * 118.82001 * 359.94373 * 13 12 11 16 16 C 1.50808 * 107.29660 * 179.97438 * 12 11 10 17 17 O 1.44003 * 106.00300 * 17.59295 * 16 12 11 18 18 C 1.43984 * 105.01538 * 331.69524 * 17 16 12 19 19 H 0.96994 * 120.00573 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99701 * 179.97438 * 14 13 12 21 21 H 0.97001 * 120.00082 * 359.97438 * 14 13 12 22 22 H 1.08995 * 110.15490 * 258.43899 * 16 12 11 23 23 H 1.09006 * 110.15647 * 136.74587 * 16 12 11 24 24 H 1.09004 * 110.13813 * 147.43613 * 18 17 16 25 25 H 1.08991 * 110.14141 * 269.16042 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3829 2.1074 -1.3947 5 1 1.4950 2.6199 0.8029 6 1 3.5872 1.4121 0.5919 7 6 2.0073 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.1024 9 6 1.3058 -2.4352 -0.1360 10 7 1.9967 -3.5716 -0.2632 11 6 1.3739 -4.7246 -0.3905 12 6 -0.0166 -4.7521 -0.3913 13 6 -0.7148 -3.5527 -0.2579 14 7 -2.1000 -3.5406 -0.2549 15 7 -0.0285 -2.4230 -0.1333 16 6 -0.4366 -6.1916 -0.5515 17 8 0.7208 -6.9820 -0.2208 18 6 1.8480 -6.1489 -0.5503 19 1 -0.4851 0.8399 0.0004 20 1 -2.5774 -2.7015 -0.1612 21 1 -2.5925 -4.3712 -0.3464 22 1 -0.7398 -6.3820 -1.5810 23 1 -1.2559 -6.4219 0.1296 24 1 2.6743 -6.3483 0.1321 25 1 2.1589 -6.3279 -1.5795 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292282.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:53 Heat of formation + Delta-G solvation = -13.913872 kcal Electronic energy + Delta-G solvation = -13178.030043 eV Core-core repulsion = 10769.789197 eV Total energy + Delta-G solvation = -2408.240846 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60132 -39.06385 -36.26629 -35.35855 -32.74982 -31.20736 -29.64739 -28.45395 -25.05160 -23.28984 -22.28320 -19.73932 -18.76969 -17.65776 -17.09814 -16.88237 -16.47823 -16.15320 -15.03402 -14.83531 -14.64305 -14.00047 -13.63680 -13.38925 -13.00144 -12.91531 -12.64865 -12.16653 -11.93169 -11.48463 -10.98233 -10.72969 -9.88676 -9.34693 -8.87712 -8.45312 -6.76500 0.70041 1.13575 1.41485 1.53222 1.57416 2.21100 2.74138 2.93000 3.10788 3.26427 3.83830 3.98970 4.33090 4.50176 4.58726 4.66977 4.76573 4.96474 5.16201 5.19121 5.54655 5.75540 6.09375 6.29293 6.60027 6.73510 6.88699 7.38023 8.26858 8.39848 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.053354 B = 0.010163 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.669289 B = 2754.407146 C = 3251.939651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.025 3.975 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.435 4.435 8 H 0.090 0.910 9 C 0.395 3.605 10 N -0.627 5.627 11 C 0.146 3.854 12 C -0.455 4.455 13 C 0.448 3.552 14 N -0.834 5.834 15 N -0.586 5.586 16 C 0.140 3.860 17 O -0.374 6.374 18 C 0.116 3.884 19 H 0.284 0.716 20 H 0.401 0.599 21 H 0.413 0.587 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -3.784 -1.415 4.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.199 4.199 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.470 4.470 8 H 0.109 0.891 9 C 0.157 3.843 10 N -0.350 5.350 11 C -0.007 4.007 12 C -0.470 4.470 13 C 0.199 3.801 14 N -0.380 5.380 15 N -0.315 5.315 16 C 0.063 3.937 17 O -0.292 6.292 18 C 0.039 3.961 19 H 0.095 0.905 20 H 0.230 0.770 21 H 0.244 0.756 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.128 0.872 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.421 -2.987 -1.213 4.032 hybrid contribution -0.627 0.146 -0.147 0.660 sum -3.048 -2.841 -1.360 4.384 Atomic orbital electron populations 1.70190 1.08881 1.29622 1.27575 1.27044 0.95938 1.04501 0.92395 0.84913 0.78905 0.74675 0.79462 1.18632 1.18572 1.17992 1.19685 0.95302 0.88805 1.43236 0.89147 1.20124 0.85238 0.91000 0.87919 1.67868 1.41583 0.98117 1.27471 1.22666 0.92165 0.95562 0.90285 1.21559 0.97198 0.97010 1.31183 1.18393 0.86947 0.88376 0.86417 1.41829 1.01293 1.12363 1.82476 1.69081 1.08661 1.24736 1.29033 1.21049 0.88319 0.84134 1.00189 1.88966 1.15557 1.37589 1.87082 1.21500 0.89829 0.82236 1.02561 0.90526 0.76955 0.75639 0.91234 0.88994 0.87209 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.87 11.45 21.84 0.25 -38.62 15 2 C 0.03 1.27 5.49 85.31 0.47 1.74 15 3 Si 1.00 37.74 29.56 68.60 2.03 39.77 15 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 5 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 6 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 7 C -0.43 -24.68 9.37 23.54 0.22 -24.46 15 8 H 0.09 4.96 7.85 -2.91 -0.02 4.94 15 9 C 0.40 23.40 7.36 135.11 0.99 24.40 15 10 N -0.63 -35.03 10.35 -181.81 -1.88 -36.91 15 11 C 0.15 7.05 7.56 42.87 0.32 7.38 15 12 C -0.46 -20.51 6.32 -19.34 -0.12 -20.63 15 13 C 0.45 21.57 7.82 133.19 1.04 22.61 15 14 N -0.83 -30.17 9.06 -55.35 -0.50 -30.67 15 15 N -0.59 -33.15 7.93 -191.79 -1.52 -34.67 15 16 C 0.14 4.83 7.42 71.27 0.53 5.36 15 17 O -0.37 -13.35 11.72 -148.98 -1.75 -15.10 15 18 C 0.12 4.25 7.63 71.32 0.54 4.79 15 19 H 0.28 13.19 8.29 -92.71 -0.77 12.43 15 20 H 0.40 14.12 8.95 -92.71 -0.83 13.29 15 21 H 0.41 11.48 8.67 -92.71 -0.80 10.67 15 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.09 2.73 8.14 -2.38 -0.02 2.71 15 24 H 0.11 3.66 8.14 -2.39 -0.02 3.64 15 25 H 0.10 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -68.39 226.70 0.24 -68.14 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.38 Total: 26.87 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 4.00 Total: 21.18 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -3.66 Total: -140.87 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.75 Total: -15.10 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -68.39 0.24 -68.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292282.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.231 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds