Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30546 * 1 3 3 Si 1.86804 * 120.00009 * 2 1 4 4 H 1.48504 * 109.46785 * 274.95791 * 3 2 1 5 5 H 1.48497 * 109.47381 * 34.95721 * 3 2 1 6 6 H 1.48492 * 109.46896 * 154.96334 * 3 2 1 7 7 C 1.40320 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99936 * 172.59870 * 7 2 1 9 9 C 1.41724 * 119.99942 * 352.86472 * 7 2 1 10 10 O 1.21899 * 120.00052 * 7.75237 * 9 7 2 11 11 C 1.47189 * 119.99866 * 187.74431 * 9 7 2 12 12 C 1.40030 * 120.16966 * 357.63697 * 11 9 7 13 13 C 1.36397 * 120.10472 * 179.97438 * 12 11 9 14 14 C 1.39514 * 120.44464 * 359.97438 * 13 12 11 15 15 O 1.35659 * 119.83759 * 180.02562 * 14 13 12 16 16 C 1.38657 * 120.32869 * 0.02562 * 14 13 12 17 17 C 1.38687 * 119.89559 * 359.73865 * 16 14 13 18 18 N 1.38717 * 120.22015 * 180.27221 * 17 16 14 19 19 H 0.97004 * 119.99590 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.94599 * 359.97438 * 12 11 9 21 21 H 1.08004 * 119.78321 * 180.02562 * 13 12 11 22 22 H 0.96705 * 114.00273 * 90.00472 * 15 14 13 23 23 H 1.08007 * 120.05052 * 180.02562 * 16 14 13 24 24 H 0.97002 * 120.00037 * 204.11926 * 18 17 16 25 25 H 0.97003 * 119.99826 * 24.12783 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.3821 2.1069 -1.3949 5 1 1.4933 2.6202 0.8022 6 1 3.5855 1.4121 0.5925 7 6 2.0070 -1.2152 -0.0005 8 1 3.0803 -1.2191 -0.1210 9 6 1.3066 -2.4379 0.1514 10 8 0.0877 -2.4474 0.1406 11 6 2.0509 -3.6962 0.3220 12 6 3.4508 -3.6962 0.2853 13 6 4.1392 -4.8630 0.4440 14 6 3.4582 -6.0640 0.6444 15 8 4.1553 -7.2171 0.8014 16 6 2.0724 -6.0849 0.6840 17 6 1.3585 -4.9060 0.5290 18 7 -0.0279 -4.9183 0.5731 19 1 -0.4850 0.8401 0.0004 20 1 3.9861 -2.7710 0.1310 21 1 5.2189 -4.8570 0.4152 22 1 4.3803 -7.4188 1.7201 23 1 1.5497 -7.0172 0.8398 24 1 -0.5333 -4.2152 0.1358 25 1 -0.4919 -5.6300 1.0412 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261296893.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -85.072344 kcal Electronic energy + Delta-G solvation = -12927.194811 eV Core-core repulsion = 10483.575551 eV Total energy + Delta-G solvation = -2443.619260 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72911 -38.87688 -37.18852 -35.14613 -34.52469 -31.22198 -29.69724 -28.28506 -24.24552 -23.11528 -21.54542 -19.28905 -18.54925 -17.89944 -17.30702 -16.67820 -16.19751 -15.66646 -15.10398 -14.78052 -14.60938 -14.35782 -13.46529 -13.36232 -13.06275 -12.77063 -12.60260 -12.26138 -12.03463 -11.35531 -11.16719 -10.95640 -9.53778 -9.45070 -8.41411 -8.30398 -6.99556 0.20972 0.77133 1.38443 1.39794 1.56147 2.22249 2.23683 2.88149 3.15728 3.56715 3.78004 4.10214 4.35955 4.39446 4.73747 4.99281 5.08934 5.25356 5.39876 5.56856 5.76150 5.96474 6.01052 6.68830 6.77548 6.82574 6.97749 7.25721 8.28652 8.51680 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.047786 B = 0.009536 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.804083 B = 2935.401885 C = 3501.615544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.027 3.973 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.548 4.548 8 H 0.091 0.909 9 C 0.376 3.624 10 O -0.588 6.588 11 C -0.239 4.239 12 C -0.036 4.036 13 C -0.214 4.214 14 C 0.155 3.845 15 O -0.503 6.503 16 C -0.240 4.240 17 C 0.242 3.758 18 N -0.864 5.864 19 H 0.280 0.720 20 H 0.132 0.868 21 H 0.146 0.854 22 H 0.411 0.589 23 H 0.141 0.859 24 H 0.405 0.595 25 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -6.603 3.019 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.170 1.170 7 C -0.579 4.579 8 H 0.109 0.891 9 C 0.278 3.722 10 O -0.482 6.482 11 C -0.245 4.245 12 C -0.055 4.055 13 C -0.234 4.234 14 C 0.109 3.891 15 O -0.317 6.317 16 C -0.264 4.264 17 C 0.133 3.867 18 N -0.411 5.411 19 H 0.091 0.909 20 H 0.150 0.850 21 H 0.164 0.836 22 H 0.271 0.729 23 H 0.159 0.841 24 H 0.244 0.756 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.427 -6.576 2.401 9.503 hybrid contribution -0.282 0.666 0.495 0.876 sum 6.145 -5.910 2.896 9.004 Atomic orbital electron populations 1.70088 1.09736 1.29651 1.32023 1.27172 0.95472 1.05286 0.91234 0.85098 0.79317 0.75140 0.79468 1.18505 1.19426 1.17016 1.21373 0.96629 0.92648 1.47235 0.89124 1.18508 0.88068 0.87888 0.77766 1.90179 1.16724 1.87948 1.53369 1.21273 0.95611 0.95091 1.12519 1.20971 0.92222 0.98632 0.93679 1.21056 1.01018 0.91292 1.10017 1.18339 0.88909 0.85308 0.96505 1.84641 1.74632 1.38165 1.34231 1.21005 0.94170 0.96602 1.14603 1.18053 0.85269 0.92009 0.91379 1.42936 1.03215 1.33120 1.61861 0.90923 0.84982 0.83613 0.72897 0.84098 0.75623 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.71 11.77 21.88 0.26 -45.45 15 2 C 0.03 1.47 5.49 85.39 0.47 1.94 15 3 Si 0.99 39.12 29.57 68.60 2.03 41.15 15 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.27 -10.23 7.11 99.48 0.71 -9.53 15 6 H -0.25 -9.12 7.11 99.48 0.71 -8.42 15 7 C -0.55 -30.51 8.83 23.64 0.21 -30.30 15 8 H 0.09 4.54 6.05 -2.91 -0.02 4.52 15 9 C 0.38 21.77 6.88 25.48 0.18 21.95 15 10 O -0.59 -36.97 12.33 -4.99 -0.06 -37.03 15 11 C -0.24 -11.57 5.91 -19.83 -0.12 -11.69 15 12 C -0.04 -1.47 9.37 22.27 0.21 -1.26 15 13 C -0.21 -7.17 9.92 22.15 0.22 -6.95 15 14 C 0.15 4.98 6.71 22.68 0.15 5.13 15 15 O -0.50 -12.65 13.48 -89.74 -1.21 -13.86 15 16 C -0.24 -8.41 9.86 22.48 0.22 -8.19 15 17 C 0.24 10.36 6.77 38.82 0.26 10.62 15 18 N -0.86 -35.46 8.58 -50.84 -0.44 -35.90 15 19 H 0.28 14.61 8.29 -92.71 -0.77 13.84 15 20 H 0.13 5.17 6.21 -2.91 -0.02 5.15 15 21 H 0.15 3.96 8.06 -2.91 -0.02 3.93 15 22 H 0.41 5.78 9.06 -74.05 -0.67 5.11 15 23 H 0.14 4.15 8.06 -2.91 -0.02 4.13 15 24 H 0.41 19.27 5.91 -92.71 -0.55 18.73 15 25 H 0.40 12.90 8.90 -92.71 -0.83 12.07 15 Total: -1.00 -71.02 227.32 1.60 -69.41 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.77 Total: 40.42 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 1.80 Total: -18.74 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -0.18 Total: -81.35 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -1.27 Total: -50.89 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -71.02 1.60 -69.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296893.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.658 kcal (2) G-P(sol) polarization free energy of solvation -71.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds