Wall clock time and date at job start Mon Mar 30 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30527 * 1 3 3 Si 1.86796 * 120.00186 * 2 1 4 4 H 1.48503 * 109.47242 * 269.99807 * 3 2 1 5 5 H 1.48504 * 109.47413 * 29.99587 * 3 2 1 6 6 H 1.48500 * 109.47532 * 149.99896 * 3 2 1 7 7 C 1.40349 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.41651 * 119.99799 * 0.02562 * 7 2 1 10 10 O 1.21861 * 119.99970 * 359.97438 * 9 7 2 11 11 C 1.47389 * 119.99540 * 179.97438 * 9 7 2 12 12 C 1.39806 * 120.20193 * 354.20722 * 11 9 7 13 13 C 1.38089 * 119.87756 * 180.02562 * 12 11 9 14 14 O 1.35936 * 119.85828 * 179.97438 * 13 12 11 15 15 C 1.39358 * 120.28002 * 0.02562 * 13 12 11 16 16 C 1.37847 * 120.40867 * 359.97438 * 15 13 12 17 17 C 1.39030 * 120.11512 * 0.27849 * 16 15 13 18 18 N 1.38756 * 120.14498 * 179.70354 * 17 16 15 19 19 H 0.97005 * 119.99984 * 0.02562 * 1 2 3 20 20 H 1.07993 * 120.06168 * 0.03535 * 12 11 9 21 21 H 0.96699 * 113.99828 * 270.01742 * 14 13 12 22 22 H 1.08002 * 119.79862 * 179.97438 * 15 13 12 23 23 H 1.07997 * 119.94503 * 180.02562 * 16 15 13 24 24 H 0.97003 * 119.99762 * 5.51459 * 18 17 16 25 25 H 0.97000 * 120.00522 * 185.51773 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4368 2.6527 0.7000 6 1 3.5369 1.4402 0.7000 7 6 2.0070 -1.2155 0.0005 8 1 3.0870 -1.2154 0.0010 9 6 1.2987 -2.4422 0.0005 10 8 0.0801 -2.4421 0.0005 11 6 2.0356 -3.7186 0.0005 12 6 3.4283 -3.7266 -0.1214 13 6 4.1120 -4.9263 -0.1212 14 8 5.4661 -4.9337 -0.2403 15 6 3.4196 -6.1296 -0.0004 16 6 2.0464 -6.1354 0.1206 17 6 1.3408 -4.9374 0.1170 18 7 -0.0419 -4.9428 0.2325 19 1 -0.4850 0.8401 -0.0004 20 1 3.9685 -2.7962 -0.2155 21 1 5.7803 -4.9799 -1.1536 22 1 3.9621 -7.0635 -0.0015 23 1 1.5174 -7.0722 0.2141 24 1 -0.5117 -5.7756 0.3961 25 1 -0.5388 -4.1139 0.1496 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261299606.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:15 Heat of formation + Delta-G solvation = -61.363564 kcal Electronic energy + Delta-G solvation = -12972.002782 eV Core-core repulsion = 10529.411611 eV Total energy + Delta-G solvation = -2442.591170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.10755 -37.11375 -35.63023 -33.11457 -32.50635 -30.49066 -27.21149 -26.50698 -22.91340 -21.45126 -19.90197 -17.52545 -16.43541 -16.35126 -15.91222 -15.25041 -14.52384 -13.84469 -13.38709 -13.11622 -12.75888 -12.65618 -11.92972 -11.61339 -11.51918 -11.10412 -10.96954 -10.40083 -10.25703 -9.96143 -9.64414 -9.04222 -8.12756 -7.52759 -6.61292 -6.37107 -4.96534 1.88907 2.22437 3.02477 3.10700 3.14818 3.97327 4.01404 4.58843 4.81915 4.96304 5.55396 5.59330 5.75386 6.02864 6.24854 6.50207 6.71880 6.90024 7.01367 7.16061 7.25159 7.48170 7.97746 8.22783 8.39948 8.59238 8.73412 8.99523 10.23250 10.45355 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.035910 B = 0.011025 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.548379 B = 2539.158176 C = 3303.005145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.512 4.512 8 H 0.076 0.924 9 C 0.399 3.601 10 O -0.551 6.551 11 C -0.180 4.180 12 C -0.063 4.063 13 C 0.007 3.993 14 O -0.501 6.501 15 C -0.096 4.096 16 C -0.216 4.216 17 C 0.245 3.755 18 N -0.860 5.860 19 H 0.274 0.726 20 H 0.132 0.868 21 H 0.371 0.629 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.378 0.622 25 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -5.964 -1.422 7.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.543 4.543 8 H 0.094 0.906 9 C 0.299 3.701 10 O -0.442 6.442 11 C -0.186 4.186 12 C -0.082 4.082 13 C -0.039 4.039 14 O -0.309 6.309 15 C -0.115 4.115 16 C -0.239 4.239 17 C 0.135 3.865 18 N -0.410 5.410 19 H 0.085 0.915 20 H 0.150 0.850 21 H 0.224 0.776 22 H 0.132 0.868 23 H 0.132 0.868 24 H 0.204 0.796 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.709 -5.770 -0.800 6.906 hybrid contribution 0.346 0.543 -0.470 0.797 sum 4.054 -5.227 -1.270 6.736 Atomic orbital electron populations 1.69942 1.07555 1.28192 1.30519 1.26022 0.94673 1.01106 0.92573 0.86355 0.80565 0.80734 0.79250 1.19335 1.20136 1.18389 1.20890 0.95111 0.91510 1.46801 0.90610 1.17874 0.87964 0.85892 0.78404 1.90096 1.15319 1.86910 1.51885 1.21144 0.93650 0.95755 1.08060 1.21522 0.93426 0.97344 0.95935 1.18166 0.82349 0.92413 1.10926 1.84880 1.18430 1.96487 1.31121 1.21016 0.93620 0.96916 0.99969 1.20369 0.93919 0.95995 1.13631 1.18210 0.84926 0.92688 0.90700 1.43579 1.04117 1.14259 1.79064 0.91463 0.85034 0.77638 0.86758 0.86798 0.79638 0.73477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.56 11.73 55.57 0.65 -19.90 15 2 C 0.08 2.12 5.50 -17.31 -0.10 2.02 15 3 Si 0.91 19.11 29.56 -169.99 -5.03 14.08 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.51 -13.99 8.84 -37.49 -0.33 -14.32 15 8 H 0.08 1.91 6.06 -52.49 -0.32 1.59 15 9 C 0.40 11.12 6.89 -34.56 -0.24 10.88 15 10 O -0.55 -16.40 12.19 5.04 0.06 -16.34 15 11 C -0.18 -4.32 5.90 -104.63 -0.62 -4.94 15 12 C -0.06 -1.35 9.35 -39.05 -0.37 -1.72 15 13 C 0.01 0.14 6.70 -39.22 -0.26 -0.12 15 14 O -0.50 -8.29 13.49 -19.54 -0.26 -8.55 15 15 C -0.10 -1.67 9.97 -39.31 -0.39 -2.07 15 16 C -0.22 -3.90 9.88 -39.43 -0.39 -4.29 15 17 C 0.25 5.25 6.78 -83.47 -0.57 4.68 15 18 N -0.86 -17.27 8.93 32.62 0.29 -16.98 15 19 H 0.27 6.90 8.29 -40.82 -0.34 6.56 15 20 H 0.13 2.78 6.24 -52.49 -0.33 2.45 15 21 H 0.37 4.25 9.06 45.56 0.41 4.67 15 22 H 0.11 1.67 8.06 -52.49 -0.42 1.24 15 23 H 0.11 1.72 8.06 -52.49 -0.42 1.29 15 24 H 0.38 6.02 8.84 -40.82 -0.36 5.66 15 25 H 0.42 9.63 5.34 -40.93 -0.22 9.42 15 LS Contribution 226.97 15.07 3.42 3.42 Total: -1.00 -31.70 226.97 -4.91 -36.62 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.79 Total: 17.54 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.26 Total: -9.88 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.94 Total: -36.89 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.20 Total: -24.89 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.70 -4.91 -36.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299606.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.748 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds