Wall clock time and date at job start Mon Mar 30 2020 02:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30527 * 1 3 3 Si 1.86796 * 120.00186 * 2 1 4 4 H 1.48503 * 109.47242 * 269.99807 * 3 2 1 5 5 H 1.48504 * 109.47413 * 29.99587 * 3 2 1 6 6 H 1.48500 * 109.47532 * 149.99896 * 3 2 1 7 7 C 1.40349 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.41651 * 119.99799 * 0.02562 * 7 2 1 10 10 O 1.21861 * 119.99970 * 359.97438 * 9 7 2 11 11 C 1.47389 * 119.99540 * 179.97438 * 9 7 2 12 12 C 1.39806 * 120.20193 * 354.20722 * 11 9 7 13 13 C 1.38089 * 119.87756 * 180.02562 * 12 11 9 14 14 O 1.35936 * 119.85828 * 179.97438 * 13 12 11 15 15 C 1.39358 * 120.28002 * 0.02562 * 13 12 11 16 16 C 1.37847 * 120.40867 * 359.97438 * 15 13 12 17 17 C 1.39030 * 120.11512 * 0.27849 * 16 15 13 18 18 N 1.38756 * 120.14498 * 179.70354 * 17 16 15 19 19 H 0.97005 * 119.99984 * 0.02562 * 1 2 3 20 20 H 1.07993 * 120.06168 * 0.03535 * 12 11 9 21 21 H 0.96699 * 113.99828 * 270.01742 * 14 13 12 22 22 H 1.08002 * 119.79862 * 179.97438 * 15 13 12 23 23 H 1.07997 * 119.94503 * 180.02562 * 16 15 13 24 24 H 0.97003 * 119.99762 * 5.51459 * 18 17 16 25 25 H 0.97000 * 120.00522 * 185.51773 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4368 2.6527 0.7000 6 1 3.5369 1.4402 0.7000 7 6 2.0070 -1.2155 0.0005 8 1 3.0870 -1.2154 0.0010 9 6 1.2987 -2.4422 0.0005 10 8 0.0801 -2.4421 0.0005 11 6 2.0356 -3.7186 0.0005 12 6 3.4283 -3.7266 -0.1214 13 6 4.1120 -4.9263 -0.1212 14 8 5.4661 -4.9337 -0.2403 15 6 3.4196 -6.1296 -0.0004 16 6 2.0464 -6.1354 0.1206 17 6 1.3408 -4.9374 0.1170 18 7 -0.0419 -4.9428 0.2325 19 1 -0.4850 0.8401 -0.0004 20 1 3.9685 -2.7962 -0.2155 21 1 5.7803 -4.9799 -1.1536 22 1 3.9621 -7.0635 -0.0015 23 1 1.5174 -7.0722 0.2141 24 1 -0.5117 -5.7756 0.3961 25 1 -0.5388 -4.1139 0.1496 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261299606.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:14 Heat of formation + Delta-G solvation = -86.129528 kcal Electronic energy + Delta-G solvation = -12973.076715 eV Core-core repulsion = 10529.411611 eV Total energy + Delta-G solvation = -2443.665103 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68839 -38.79934 -37.32357 -34.91668 -34.27332 -32.13438 -28.96866 -28.27965 -24.59729 -23.05244 -21.63386 -19.07465 -18.37327 -17.94319 -17.45645 -17.00558 -16.06090 -15.41174 -15.09057 -14.68657 -14.59666 -14.43978 -13.50570 -13.31958 -13.25292 -12.73401 -12.67879 -12.24317 -12.04579 -11.39726 -11.14808 -11.00308 -9.72725 -9.54949 -8.34842 -8.19350 -7.05908 0.29159 0.70324 1.36711 1.37425 1.53403 2.20126 2.21640 2.88379 3.29923 3.56197 3.75069 4.10970 4.15027 4.46588 4.71942 4.97826 5.16682 5.22314 5.40557 5.46905 5.69026 5.95083 5.97392 6.63095 6.70761 6.81856 7.09535 7.28568 8.23430 8.46906 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.035910 B = 0.011025 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.548379 B = 2539.158176 C = 3303.005145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.027 3.973 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.377 3.623 10 O -0.586 6.586 11 C -0.226 4.226 12 C -0.075 4.075 13 C 0.015 3.985 14 O -0.504 6.504 15 C -0.081 4.081 16 C -0.203 4.203 17 C 0.227 3.773 18 N -0.861 5.861 19 H 0.282 0.718 20 H 0.123 0.877 21 H 0.397 0.603 22 H 0.156 0.844 23 H 0.152 0.848 24 H 0.397 0.603 25 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.409 -7.130 -1.505 9.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.576 4.576 8 H 0.104 0.896 9 C 0.279 3.721 10 O -0.481 6.481 11 C -0.232 4.232 12 C -0.094 4.094 13 C -0.031 4.031 14 O -0.315 6.315 15 C -0.100 4.100 16 C -0.226 4.226 17 C 0.117 3.883 18 N -0.411 5.411 19 H 0.093 0.907 20 H 0.141 0.859 21 H 0.254 0.746 22 H 0.174 0.826 23 H 0.170 0.830 24 H 0.226 0.774 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.630 -6.986 -0.897 9.017 hybrid contribution -0.178 0.753 -0.463 0.901 sum 5.452 -6.234 -1.359 8.392 Atomic orbital electron populations 1.70056 1.09626 1.29827 1.31538 1.27169 0.95550 1.05252 0.91240 0.85103 0.79027 0.75040 0.79820 1.18160 1.19106 1.17503 1.21347 0.95913 0.92548 1.47777 0.89568 1.18484 0.87990 0.88045 0.77591 1.90058 1.16603 1.88081 1.53317 1.20874 0.94757 0.95217 1.12332 1.21508 0.92667 0.98457 0.96779 1.18174 0.83259 0.91947 1.09754 1.84810 1.16822 1.96347 1.33527 1.21455 0.93439 0.97891 0.97220 1.20752 0.94373 0.95977 1.11455 1.18462 0.85386 0.93185 0.91292 1.43444 1.04034 1.14534 1.79050 0.90721 0.85918 0.74646 0.82601 0.83039 0.77422 0.75135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.41 11.73 21.89 0.26 -45.15 15 2 C 0.03 1.48 5.50 85.40 0.47 1.95 15 3 Si 0.99 39.61 29.56 68.60 2.03 41.63 15 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 15 5 H -0.27 -10.12 7.11 99.48 0.71 -9.42 15 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 15 7 C -0.55 -30.89 8.84 23.63 0.21 -30.68 15 8 H 0.09 4.49 6.06 -2.91 -0.02 4.48 15 9 C 0.38 21.99 6.89 25.52 0.18 22.17 15 10 O -0.59 -36.81 12.19 -4.86 -0.06 -36.87 15 11 C -0.23 -11.07 5.90 -19.87 -0.12 -11.19 15 12 C -0.07 -3.21 9.35 22.61 0.21 -3.00 15 13 C 0.01 0.52 6.70 22.50 0.15 0.68 15 14 O -0.50 -14.93 13.49 -92.83 -1.25 -16.18 15 15 C -0.08 -2.49 9.97 22.45 0.22 -2.26 15 16 C -0.20 -6.66 9.88 22.37 0.22 -6.44 15 17 C 0.23 9.61 6.78 38.86 0.26 9.88 15 18 N -0.86 -34.84 8.93 -50.70 -0.45 -35.29 15 19 H 0.28 14.65 8.29 -92.70 -0.77 13.88 15 20 H 0.12 5.29 6.24 -2.91 -0.02 5.27 15 21 H 0.40 7.61 9.06 -74.06 -0.67 6.93 15 22 H 0.16 3.56 8.06 -2.91 -0.02 3.53 15 23 H 0.15 3.82 8.06 -2.91 -0.02 3.79 15 24 H 0.40 12.32 8.84 -92.71 -0.82 11.50 15 25 H 0.41 19.44 5.34 -94.50 -0.50 18.94 15 Total: -1.00 -71.39 226.97 1.60 -69.79 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: -0.73 Total: 40.98 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 1.81 Total: -18.91 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -0.20 Total: -80.45 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.31 Total: -53.05 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -71.39 1.60 -69.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299606.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.339 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds