Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86793 * 120.00296 * 2 1 4 4 H 1.48503 * 109.47220 * 239.99981 * 3 2 1 5 5 H 1.48502 * 109.47422 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47657 * 119.99958 * 3 2 1 7 7 C 1.40330 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.41769 * 119.99899 * 0.02562 * 7 2 1 10 10 O 1.21837 * 120.00464 * 359.97438 * 9 7 2 11 11 C 1.47425 * 119.99740 * 179.97438 * 9 7 2 12 12 C 1.39959 * 120.20360 * 354.21024 * 11 9 7 13 13 C 1.37595 * 120.01366 * 179.78791 * 12 11 9 14 14 C 1.38804 * 120.43469 * 0.47566 * 13 12 11 15 15 C 1.38281 * 120.40751 * 359.77781 * 14 13 12 16 16 O 1.36007 * 120.01418 * 180.02562 * 15 14 13 17 17 C 1.39458 * 119.97011 * 359.97438 * 15 14 13 18 18 N 1.38919 * 120.21031 * 179.97438 * 17 15 14 19 19 H 0.97005 * 119.99756 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.99137 * 0.02562 * 12 11 9 21 21 H 1.08004 * 119.77883 * 180.20821 * 13 12 11 22 22 H 1.08007 * 119.79860 * 179.76080 * 14 13 12 23 23 H 0.96696 * 114.00489 * 269.98720 * 16 15 14 24 24 H 0.96996 * 120.00193 * 185.48692 * 18 17 15 25 25 H 0.97001 * 119.99926 * 5.49810 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6176 0.0000 4 1 3.0932 1.6963 -1.2125 5 1 1.2745 2.7465 -0.0006 6 1 3.0932 1.6964 1.2124 7 6 2.0070 -1.2153 0.0005 8 1 3.0869 -1.2154 0.0001 9 6 1.2980 -2.4430 0.0005 10 8 0.0796 -2.4430 0.0005 11 6 2.0351 -3.7198 0.0005 12 6 3.4293 -3.7279 -0.1215 13 6 4.1137 -4.9216 -0.1166 14 6 3.4296 -6.1238 -0.0011 15 6 2.0518 -6.1367 0.1152 16 8 1.3896 -7.3193 0.2285 17 6 1.3415 -4.9365 0.1174 18 7 -0.0428 -4.9437 0.2334 19 1 -0.4850 0.8401 -0.0004 20 1 3.9684 -2.7968 -0.2156 21 1 5.1899 -4.9232 -0.2076 22 1 3.9768 -7.0550 -0.0023 23 1 1.1241 -7.7041 -0.6180 24 1 -0.5404 -4.1148 0.1548 25 1 -0.5118 -5.7776 0.3932 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301328.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = -85.983861 kcal Electronic energy + Delta-G solvation = -13026.898881 eV Core-core repulsion = 10583.240094 eV Total energy + Delta-G solvation = -2443.658787 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.80382 -38.72515 -36.97215 -35.34890 -34.49859 -31.48625 -29.12441 -28.50572 -24.52294 -22.91773 -21.58963 -19.41593 -18.32238 -17.64037 -17.38106 -17.13387 -16.17067 -15.35346 -15.26091 -14.86008 -14.62131 -14.38936 -13.34342 -13.17122 -13.03960 -12.70916 -12.61232 -12.11675 -12.02176 -11.58520 -11.44876 -10.97264 -9.53651 -9.48436 -8.32935 -8.26694 -7.04310 0.27804 0.76976 1.39294 1.41125 1.53713 2.21827 2.23272 2.89896 3.25901 3.41941 3.75937 4.14996 4.32137 4.56893 4.66016 4.99982 5.16707 5.20703 5.40202 5.56277 5.81664 5.97044 6.07985 6.59367 6.71148 6.74691 7.01900 7.23761 8.25408 8.49006 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.051525 B = 0.009776 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.298764 B = 2863.375207 C = 3391.762620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.544 4.544 8 H 0.093 0.907 9 C 0.376 3.624 10 O -0.590 6.590 11 C -0.230 4.230 12 C -0.056 4.056 13 C -0.180 4.180 14 C -0.086 4.086 15 C -0.009 4.009 16 O -0.497 6.497 17 C 0.207 3.793 18 N -0.859 5.859 19 H 0.281 0.719 20 H 0.131 0.869 21 H 0.154 0.846 22 H 0.155 0.845 23 H 0.393 0.607 24 H 0.406 0.594 25 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 -6.795 -1.540 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.194 4.194 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.575 4.575 8 H 0.111 0.889 9 C 0.278 3.722 10 O -0.484 6.484 11 C -0.236 4.236 12 C -0.075 4.075 13 C -0.200 4.200 14 C -0.105 4.105 15 C -0.058 4.058 16 O -0.307 6.307 17 C 0.097 3.903 18 N -0.409 5.409 19 H 0.092 0.908 20 H 0.149 0.851 21 H 0.172 0.828 22 H 0.173 0.827 23 H 0.249 0.751 24 H 0.249 0.751 25 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.357 -6.603 -0.944 9.215 hybrid contribution -0.535 0.555 -0.431 0.883 sum 5.822 -6.049 -1.375 8.507 Atomic orbital electron populations 1.70076 1.09784 1.29836 1.31703 1.27218 0.95528 1.05409 0.91198 0.85116 0.78539 0.74499 0.80595 1.17491 1.19523 1.17721 1.21371 0.96177 0.92235 1.47696 0.88860 1.18586 0.87969 0.88133 0.77536 1.90053 1.16905 1.88130 1.53362 1.20983 0.95909 0.94315 1.12421 1.21425 0.92005 0.99387 0.94637 1.21030 1.00932 0.90858 1.07171 1.21497 0.92148 0.99709 0.97146 1.17984 0.91100 0.83257 1.13488 1.84832 1.76567 1.33665 1.35633 1.18796 0.85507 0.93175 0.92861 1.43344 1.04101 1.14227 1.79193 0.90824 0.85128 0.82791 0.82737 0.75142 0.75097 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.70 11.73 21.89 0.26 -45.45 15 2 C 0.03 1.37 5.50 85.39 0.47 1.84 15 3 Si 0.99 38.94 29.56 68.60 2.03 40.97 15 4 H -0.25 -9.24 7.11 99.48 0.71 -8.54 15 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 6 H -0.25 -9.41 7.11 99.48 0.71 -8.71 15 7 C -0.54 -30.29 8.85 23.65 0.21 -30.09 15 8 H 0.09 4.64 6.06 -2.91 -0.02 4.62 15 9 C 0.38 21.88 6.89 25.57 0.18 22.05 15 10 O -0.59 -37.46 12.19 -4.79 -0.06 -37.52 15 11 C -0.23 -11.25 5.90 -19.88 -0.12 -11.37 15 12 C -0.06 -2.24 9.42 22.53 0.21 -2.03 15 13 C -0.18 -5.70 10.02 22.25 0.22 -5.48 15 14 C -0.09 -2.64 9.97 22.42 0.22 -2.42 15 15 C -0.01 -0.33 6.72 22.57 0.15 -0.18 15 16 O -0.50 -14.71 12.75 -93.62 -1.19 -15.90 15 17 C 0.21 9.17 6.79 38.87 0.26 9.44 15 18 N -0.86 -37.22 8.92 -50.49 -0.45 -37.67 15 19 H 0.28 14.70 8.29 -92.70 -0.77 13.93 15 20 H 0.13 5.03 6.24 -2.91 -0.02 5.01 15 21 H 0.15 3.63 8.06 -2.91 -0.02 3.61 15 22 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 23 H 0.39 7.86 9.06 -74.06 -0.67 7.19 15 24 H 0.41 20.34 5.34 -94.39 -0.50 19.83 15 25 H 0.39 14.15 8.19 -92.71 -0.76 13.39 15 Total: -1.00 -71.12 225.84 1.73 -69.39 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -0.67 Total: 44.40 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 1.81 Total: -18.22 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -0.19 Total: -83.12 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -1.25 Total: -53.43 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -71.12 1.73 -69.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301328.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.593 kcal (2) G-P(sol) polarization free energy of solvation -71.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds