Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30407 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48497 * 109.47090 * 270.00603 * 3 2 1 5 5 H 1.48496 * 109.47056 * 30.00161 * 3 2 1 6 6 H 1.48493 * 109.46967 * 150.00372 * 3 2 1 7 7 C 1.40781 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00462 * 180.02562 * 7 2 1 9 9 C 1.38412 * 120.00199 * 359.97438 * 7 2 1 10 10 O 1.35133 * 126.78616 * 359.97438 * 9 7 2 11 11 N 1.41241 * 109.96192 * 180.02562 * 10 9 7 12 12 C 1.31727 * 110.55873 * 0.02562 * 11 10 9 13 13 C 1.41435 * 134.19209 * 180.02562 * 12 11 10 14 14 C 1.35944 * 119.68706 * 180.02562 * 13 12 11 15 15 C 1.39448 * 121.68388 * 359.96108 * 14 13 12 16 16 F 1.35106 * 119.32464 * 180.02562 * 15 14 13 17 17 C 1.38070 * 121.34776 * 0.05871 * 15 14 13 18 18 C 1.39252 * 119.50488 * 359.96150 * 17 15 14 19 19 H 0.96995 * 120.00208 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.15673 * 359.72052 * 13 12 11 21 21 H 1.08000 * 119.15970 * 179.97438 * 14 13 12 22 22 H 1.07995 * 120.25070 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3041 0.0000 0.0000 3 14 2.2381 1.6177 0.0000 4 1 2.4854 2.0465 -1.4000 5 1 1.4356 2.6526 0.7001 6 1 3.5356 1.4401 0.6999 7 6 2.0080 -1.2192 -0.0005 8 1 3.0879 -1.2193 -0.0001 9 6 1.3160 -2.4179 -0.0005 10 8 -0.0259 -2.5776 0.0004 11 7 -0.3478 -3.9529 0.0007 12 6 0.7477 -4.6844 0.0004 13 6 1.0045 -6.0752 0.0000 14 6 2.2881 -6.5229 0.0004 15 6 3.3704 -5.6437 0.0003 16 9 4.6267 -6.1407 0.0002 17 6 3.1845 -4.2755 0.0011 18 6 1.8912 -3.7592 0.0012 19 1 -0.4850 0.8400 0.0004 20 1 0.1847 -6.7783 0.0044 21 1 2.4744 -7.5867 0.0005 22 1 4.0356 -3.6108 0.0015 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301734.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = -29.657397 kcal Electronic energy + Delta-G solvation = -12590.422417 eV Core-core repulsion = 10025.745824 eV Total energy + Delta-G solvation = -2564.676593 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.36163 -41.32270 -37.86109 -36.28811 -32.97401 -32.18459 -30.56262 -27.40654 -24.96795 -22.69581 -22.08075 -19.62999 -18.64076 -17.50445 -17.41148 -16.44282 -16.28576 -15.78488 -15.39198 -14.94082 -14.42853 -14.17407 -13.63803 -13.49567 -13.28021 -12.95837 -12.74808 -12.20454 -11.88270 -11.63936 -11.08115 -10.96991 -10.08423 -9.31973 -8.94222 -7.10622 -0.07997 0.88035 1.16945 1.31172 1.57629 1.71163 2.01278 2.59756 2.65763 3.02804 3.54306 3.83946 3.98240 4.27425 4.42288 4.49600 4.75275 4.90406 5.29199 5.34371 5.48226 5.58408 5.80565 5.88329 6.02121 6.31287 7.24749 7.64315 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.043951 B = 0.010185 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.925917 B = 2748.453871 C = 3375.538900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.007 3.993 3 Si 1.027 2.973 4 H -0.248 1.248 5 H -0.257 1.257 6 H -0.236 1.236 7 C -0.338 4.338 8 H 0.151 0.849 9 C 0.184 3.816 10 O -0.119 6.119 11 N -0.494 5.494 12 C 0.124 3.876 13 C -0.186 4.186 14 C -0.052 4.052 15 C -0.076 4.076 16 F -0.159 7.159 17 C -0.019 4.019 18 C -0.328 4.328 19 H 0.320 0.680 20 H 0.138 0.862 21 H 0.158 0.842 22 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 2.637 0.016 7.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.172 1.172 5 H -0.181 1.181 6 H -0.158 1.158 7 C -0.363 4.363 8 H 0.168 0.832 9 C 0.124 3.876 10 O -0.116 6.116 11 N -0.264 5.264 12 C -0.029 4.029 13 C -0.209 4.209 14 C -0.072 4.072 15 C -0.098 4.098 16 F -0.138 7.138 17 C -0.039 4.039 18 C -0.337 4.337 19 H 0.133 0.867 20 H 0.155 0.845 21 H 0.176 0.824 22 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.152 2.801 0.022 5.864 hybrid contribution 0.682 0.271 -0.010 0.734 sum 5.834 3.072 0.012 6.593 Atomic orbital electron populations 1.69655 1.10575 1.34768 1.20666 1.28018 0.96042 1.06974 0.91031 0.84513 0.79033 0.71393 0.80930 1.17198 1.18055 1.15791 1.20230 0.97857 0.87574 1.30670 0.83192 1.21740 0.84044 0.93481 0.88328 1.89179 1.19729 1.22135 1.80583 1.80062 1.17110 0.84080 1.45135 1.21985 0.91938 0.96320 0.92664 1.19688 0.97201 0.89639 1.14371 1.20590 0.90443 1.00289 0.95903 1.16982 0.79227 0.91323 1.22317 1.91341 1.38436 1.88081 1.95984 1.20271 0.95120 0.93761 0.94719 1.21300 0.94592 0.90695 1.27107 0.86685 0.84464 0.82418 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -33.54 12.02 21.97 0.26 -33.28 14 2 C 0.01 0.31 5.51 85.53 0.47 0.78 14 3 Si 1.03 27.83 29.57 68.60 2.03 29.86 14 4 H -0.25 -6.44 7.11 99.48 0.71 -5.73 14 5 H -0.26 -6.62 7.11 99.48 0.71 -5.91 14 6 H -0.24 -5.87 7.11 99.48 0.71 -5.16 14 7 C -0.34 -15.22 9.34 22.93 0.21 -15.01 14 8 H 0.15 5.68 7.86 -2.91 -0.02 5.66 14 9 C 0.18 9.86 7.06 24.31 0.17 10.03 14 10 O -0.12 -7.15 10.36 26.89 0.28 -6.87 14 11 N -0.49 -29.17 12.85 -48.72 -0.63 -29.80 14 12 C 0.12 6.62 7.47 42.27 0.32 6.93 14 13 C -0.19 -8.16 10.10 22.52 0.23 -7.93 14 14 C -0.05 -1.99 9.86 22.03 0.22 -1.77 14 15 C -0.08 -3.15 7.28 22.52 0.16 -2.99 14 16 F -0.16 -6.09 17.24 44.97 0.78 -5.32 14 17 C -0.02 -0.85 10.07 22.47 0.23 -0.62 14 18 C -0.33 -16.90 6.49 -18.71 -0.12 -17.02 14 19 H 0.32 12.38 8.29 -92.71 -0.77 11.62 14 20 H 0.14 5.29 8.06 -2.91 -0.02 5.27 14 21 H 0.16 4.71 8.06 -2.91 -0.02 4.69 14 22 H 0.14 5.27 8.06 -2.91 -0.02 5.24 14 Total: -1.00 -63.20 216.85 5.87 -57.34 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.26 Total: 15.67 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 1.89 Total: -27.61 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.36 Total: -63.07 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.28 Total: -6.87 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 27.83 SS G_CDS: 2.03 Total: 29.86 kcal Total: -63.20 5.87 -57.34 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301734.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.682 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds