Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86807 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46918 * 300.00087 * 3 2 1 6 6 H 1.48507 * 109.47064 * 59.99830 * 3 2 1 7 7 C 1.39987 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.39629 * 120.00189 * 0.02562 * 7 2 1 10 10 N 1.33520 * 126.52528 * 0.02688 * 9 7 2 11 11 N 1.28624 * 109.92368 * 179.97438 * 10 9 7 12 12 C 1.33185 * 109.98322 * 0.02562 * 11 10 9 13 13 C 1.40363 * 133.03655 * 180.02562 * 12 11 10 14 14 F 1.35103 * 120.42989 * 359.97438 * 13 12 11 15 15 C 1.37965 * 119.13534 * 180.02562 * 13 12 11 16 16 C 1.40068 * 119.52052 * 359.96742 * 15 13 12 17 17 C 1.35496 * 120.23582 * 359.97438 * 16 15 13 18 18 N 1.35964 * 120.70204 * 0.03911 * 17 16 15 19 19 H 0.97008 * 120.00218 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.24474 * 179.97438 * 15 13 12 21 21 H 1.07999 * 119.88291 * 179.97438 * 16 15 13 22 22 H 1.08001 * 119.65385 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3465 0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8841 2.3966 1.2125 7 6 2.0089 -1.2123 0.0005 8 1 3.0889 -1.2123 0.0010 9 6 1.3109 -2.4216 0.0005 10 7 -0.0157 -2.5734 -0.0004 11 7 -0.3136 -3.8247 -0.0006 12 6 0.7986 -4.5574 0.0008 13 6 1.0341 -5.9411 0.0007 14 9 0.0005 -6.8111 -0.0004 15 6 2.3348 -6.4011 0.0030 16 6 3.3918 -5.4821 0.0046 17 6 3.1387 -4.1510 0.0034 18 7 1.8605 -3.6874 0.0014 19 1 -0.4851 0.8401 -0.0004 20 1 2.5365 -7.4621 0.0034 21 1 4.4123 -5.8358 0.0068 22 1 3.9609 -3.4507 0.0042 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261309060.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = 49.282785 kcal Electronic energy + Delta-G solvation = -12798.495380 eV Core-core repulsion = 10269.534641 eV Total energy + Delta-G solvation = -2528.960739 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.29083 -41.55634 -36.71505 -33.99108 -32.26419 -29.83043 -28.64134 -25.80076 -22.99924 -22.11438 -21.03040 -18.04663 -17.01388 -16.52806 -15.58240 -15.47727 -15.22966 -14.66113 -14.22308 -13.53701 -13.20815 -12.01992 -11.83930 -11.53510 -11.24669 -11.22061 -11.15030 -10.50595 -10.04990 -10.02551 -9.46559 -8.83285 -8.28552 -7.21232 -6.89494 -4.72980 1.43482 2.19203 2.91251 2.94553 3.00543 3.56001 3.83630 3.92814 4.34302 4.84939 5.07249 5.15031 5.28824 5.58117 5.97936 6.34082 6.44962 6.64277 6.67854 6.94136 7.06545 7.38897 7.75208 7.90172 8.43643 8.53952 10.02381 10.25987 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.057990 B = 0.010173 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.727848 B = 2751.618168 C = 3224.504063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.072 3.928 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.428 4.428 8 H 0.092 0.908 9 C 0.322 3.678 10 N -0.299 5.299 11 N -0.262 5.262 12 C 0.047 3.953 13 C 0.157 3.843 14 F -0.129 7.129 15 C -0.174 4.174 16 C -0.179 4.179 17 C 0.100 3.900 18 N -0.432 5.432 19 H 0.285 0.715 20 H 0.134 0.866 21 H 0.140 0.860 22 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -3.450 0.007 8.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.155 4.155 3 Si 0.752 3.248 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.110 0.890 9 C 0.086 3.914 10 N -0.147 5.147 11 N -0.109 5.109 12 C -0.201 4.201 13 C 0.134 3.866 14 F -0.108 7.108 15 C -0.200 4.200 16 C -0.203 4.203 17 C -0.024 4.024 18 N -0.121 5.121 19 H 0.096 0.904 20 H 0.151 0.849 21 H 0.158 0.842 22 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.999 -2.846 0.006 6.640 hybrid contribution 1.605 0.189 0.001 1.616 sum 7.604 -2.657 0.007 8.055 Atomic orbital electron populations 1.70028 1.07193 1.29392 1.28390 1.25884 0.95103 1.01112 0.93359 0.85921 0.80217 0.79748 0.78919 1.18284 1.19444 1.19448 1.18253 0.94414 0.86958 1.47123 0.89027 1.21735 0.89405 0.82701 0.97576 1.75767 1.08046 1.04723 1.26146 1.74795 1.21589 0.99607 1.14895 1.21042 0.86766 0.91482 1.20814 1.16386 0.84030 0.82883 1.03342 1.91444 1.58020 1.67668 1.93635 1.20866 0.89871 1.00312 1.08949 1.20137 0.99073 0.90783 1.10350 1.21398 0.86115 0.95895 0.99011 1.43449 1.05328 1.07959 1.55357 0.90401 0.84860 0.84222 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.15 11.93 55.55 0.66 -18.48 14 2 C 0.07 1.75 5.50 -17.30 -0.10 1.66 14 3 Si 0.93 17.45 29.56 -169.99 -5.03 12.43 14 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 14 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 14 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.43 -10.83 9.26 -38.41 -0.36 -11.18 14 8 H 0.09 2.05 7.85 -52.49 -0.41 1.64 14 9 C 0.32 8.85 7.58 -154.83 -1.17 7.68 14 10 N -0.30 -8.98 10.48 31.23 0.33 -8.65 14 11 N -0.26 -7.55 12.31 31.18 0.38 -7.17 14 12 C 0.05 1.19 7.88 -155.53 -1.23 -0.03 14 13 C 0.16 3.36 7.38 -38.88 -0.29 3.07 14 14 F -0.13 -2.70 17.29 2.25 0.04 -2.66 14 15 C -0.17 -3.00 10.12 -39.00 -0.39 -3.39 14 16 C -0.18 -2.86 9.99 -39.87 -0.40 -3.26 14 17 C 0.10 1.89 10.87 -16.70 -0.18 1.70 14 18 N -0.43 -10.54 2.99 -61.97 -0.19 -10.72 14 19 H 0.28 6.67 8.30 -40.82 -0.34 6.33 14 20 H 0.13 1.82 8.06 -52.49 -0.42 1.40 14 21 H 0.14 1.62 8.06 -52.49 -0.42 1.20 14 22 H 0.15 2.39 8.06 -52.49 -0.42 1.97 14 LS Contribution 214.78 15.07 3.24 3.24 Total: -1.00 -31.21 214.78 -5.49 -36.70 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -0.81 Total: -0.92 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -4.11 Total: -3.76 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.19 Total: -45.03 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.21 -5.49 -36.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309060.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.983 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds