Wall clock time and date at job start Mon Mar 30 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30424 * 1 3 3 Si 1.86804 * 119.99447 * 2 1 4 4 H 1.48501 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46991 * 299.99688 * 3 2 1 6 6 H 1.48496 * 109.47177 * 59.99543 * 3 2 1 7 7 C 1.40750 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.38417 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.35424 * 127.77208 * 359.97368 * 9 7 2 11 11 N 1.20853 * 113.50803 * 180.02562 * 10 9 7 12 12 C 1.31407 * 114.22223 * 0.02562 * 11 10 9 13 13 C 1.46044 * 127.77030 * 180.02562 * 9 7 2 14 14 C 1.38501 * 137.94617 * 0.02562 * 13 9 7 15 15 C 1.38069 * 119.39502 * 179.97438 * 14 13 9 16 16 C 1.39075 * 121.37482 * 0.02562 * 15 14 13 17 17 C 1.36438 * 121.85912 * 359.97438 * 16 15 14 18 18 F 1.35095 * 120.25489 * 179.97438 * 17 16 15 19 19 H 0.97001 * 120.00564 * 0.02562 * 1 2 3 20 20 H 1.07996 * 120.29922 * 359.97438 * 14 13 9 21 21 H 1.07994 * 119.31199 * 179.97438 * 15 14 13 22 22 H 1.08003 * 119.06980 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3042 0.0000 0.0000 3 14 2.2381 1.6179 0.0000 4 1 3.6981 1.3466 -0.0006 5 1 1.8793 2.3965 -1.2125 6 1 1.8792 2.3966 1.2124 7 6 2.0081 -1.2189 0.0005 8 1 3.0880 -1.2188 0.0010 9 6 1.3161 -2.4176 0.0005 10 8 -0.0257 -2.6009 0.0006 11 7 -0.3534 -3.7641 0.0011 12 6 0.6539 -4.6080 0.0020 13 6 1.8687 -3.7695 0.0016 14 6 3.1165 -4.3704 0.0032 15 6 3.2052 -5.7483 0.0043 16 6 2.0667 -6.5471 0.0031 17 6 0.8116 -6.0121 0.0015 18 9 -0.2721 -6.8188 -0.0001 19 1 -0.4851 0.8400 -0.0004 20 1 4.0120 -3.7667 0.0037 21 1 4.1789 -6.2154 0.0051 22 1 2.1794 -7.6212 0.0044 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312374.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:40 Heat of formation + Delta-G solvation = 1.472574 kcal Electronic energy + Delta-G solvation = -12719.774289 eV Core-core repulsion = 10156.447593 eV Total energy + Delta-G solvation = -2563.326696 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.69658 -42.19305 -36.61165 -34.72979 -30.98805 -30.76054 -28.73166 -26.13440 -23.23025 -22.04134 -20.07741 -18.26990 -16.93386 -15.96450 -15.61181 -15.46812 -14.84699 -14.29863 -14.12644 -13.72673 -12.96623 -12.07814 -11.99841 -11.81851 -11.52867 -11.00988 -10.91983 -10.86548 -10.37707 -10.21727 -9.16603 -8.97776 -8.20303 -7.59660 -7.14189 -4.96186 1.72442 2.50778 2.68586 2.78320 2.80569 3.38234 3.41611 4.41192 4.81392 4.99165 5.18736 5.36994 5.72208 5.99520 6.22134 6.27767 6.46228 6.59648 7.08024 7.27137 7.39444 7.42893 7.54401 7.76259 7.90051 8.05780 9.33896 10.27675 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.057226 B = 0.009862 C = 0.008437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.166968 B = 2838.620200 C = 3317.945815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.053 3.947 3 Si 0.940 3.060 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.355 4.355 8 H 0.121 0.879 9 C 0.170 3.830 10 O 0.070 5.930 11 N -0.459 5.459 12 C 0.062 3.938 13 C -0.299 4.299 14 C 0.011 3.989 15 C -0.249 4.249 16 C -0.088 4.088 17 C 0.031 3.969 18 F -0.157 7.157 19 H 0.304 0.696 20 H 0.110 0.890 21 H 0.110 0.890 22 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 1.850 0.004 6.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.383 4.383 8 H 0.139 0.861 9 C 0.109 3.891 10 O 0.027 5.973 11 N -0.185 5.185 12 C -0.089 4.089 13 C -0.307 4.307 14 C -0.008 4.008 15 C -0.270 4.270 16 C -0.110 4.110 17 C 0.008 3.992 18 F -0.136 7.136 19 H 0.116 0.884 20 H 0.128 0.872 21 H 0.128 0.872 22 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.194 1.896 0.003 4.603 hybrid contribution 0.857 0.356 0.000 0.928 sum 5.051 2.252 0.003 5.531 Atomic orbital electron populations 1.69583 1.08274 1.32257 1.23566 1.26611 0.95376 1.03249 0.92473 0.85685 0.80680 0.77890 0.79609 1.17287 1.18705 1.18700 1.19163 0.95982 0.87216 1.35891 0.86087 1.22119 0.83652 0.92505 0.90844 1.85144 1.20800 1.19209 1.72139 1.73377 1.22095 0.89335 1.33682 1.21233 0.91390 0.93806 1.02489 1.20619 0.93996 0.91248 1.24860 1.19877 0.94220 0.93751 0.92929 1.20033 0.96437 0.92659 1.17859 1.20164 0.90724 0.99156 1.00921 1.16117 0.82962 0.83728 1.16372 1.91343 1.54434 1.72689 1.95138 0.88449 0.87217 0.87224 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.28 12.09 55.59 0.67 -15.61 14 2 C 0.05 1.11 5.51 -17.20 -0.09 1.02 14 3 Si 0.94 14.93 29.57 -169.99 -5.03 9.91 14 4 H -0.25 -3.83 7.11 56.52 0.40 -3.42 14 5 H -0.26 -4.11 7.11 56.52 0.40 -3.71 14 6 H -0.26 -4.11 7.11 56.52 0.40 -3.71 14 7 C -0.36 -8.11 9.37 -38.57 -0.36 -8.47 14 8 H 0.12 2.43 7.86 -52.49 -0.41 2.02 14 9 C 0.17 4.43 7.11 -36.39 -0.26 4.17 14 10 O 0.07 2.00 9.56 13.29 0.13 2.13 14 11 N -0.46 -13.32 11.95 33.29 0.40 -12.92 14 12 C 0.06 1.70 7.58 -83.06 -0.63 1.07 14 13 C -0.30 -7.60 6.73 -102.85 -0.69 -8.30 14 14 C 0.01 0.24 10.09 -39.55 -0.40 -0.16 14 15 C -0.25 -4.95 9.99 -39.33 -0.39 -5.34 14 16 C -0.09 -1.85 9.87 -39.92 -0.39 -2.24 14 17 C 0.03 0.76 7.35 -39.07 -0.29 0.47 14 18 F -0.16 -3.82 17.28 2.25 0.04 -3.78 14 19 H 0.30 5.95 8.29 -40.82 -0.34 5.62 14 20 H 0.11 2.01 8.06 -52.49 -0.42 1.59 14 21 H 0.11 1.80 8.06 -52.49 -0.42 1.37 14 22 H 0.11 2.00 8.06 -52.48 -0.42 1.58 14 LS Contribution 215.66 15.07 3.25 3.25 Total: -1.00 -28.61 215.66 -4.86 -33.47 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -0.81 Total: 1.33 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -3.51 Total: -17.78 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 1.07 Total: -28.53 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.13 Total: 2.13 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 14.93 SS G_CDS: -5.03 Total: 9.91 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -28.61 -4.86 -33.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312374.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.946 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds