Wall clock time and date at job start Mon Mar 30 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86805 * 119.99970 * 2 1 4 4 H 1.48496 * 109.46936 * 240.00354 * 3 2 1 5 5 H 1.48497 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46536 * 120.00285 * 3 2 1 7 7 C 1.40013 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.39632 * 119.99622 * 359.97438 * 7 2 1 10 10 N 1.33523 * 126.53070 * 0.81384 * 9 7 2 11 11 N 1.28625 * 109.91759 * 179.91464 * 10 9 7 12 12 C 1.33257 * 109.98101 * 359.46508 * 11 10 9 13 13 C 1.40131 * 133.00842 * 179.97438 * 12 11 10 14 14 C 1.36683 * 119.34590 * 179.71775 * 13 12 11 15 15 C 1.40246 * 119.67568 * 0.27703 * 14 13 12 16 16 F 1.35098 * 119.92301 * 180.02562 * 15 14 13 17 17 C 1.35740 * 120.15085 * 359.97438 * 15 14 13 18 18 N 1.36030 * 120.45956 * 359.97438 * 17 15 14 19 19 H 0.96998 * 120.00199 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.33174 * 359.97438 * 13 12 11 21 21 H 1.07997 * 120.16013 * 180.29714 * 14 13 12 22 22 H 1.08000 * 119.77556 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0089 -1.2125 -0.0005 8 1 3.0889 -1.2125 -0.0010 9 6 1.3107 -2.4217 -0.0005 10 7 -0.0158 -2.5736 -0.0153 11 7 -0.3137 -3.8248 -0.0120 12 6 0.7991 -4.5578 -0.0067 13 6 1.0337 -5.9394 -0.0012 14 6 2.3205 -6.4004 -0.0023 15 6 3.3851 -5.4874 -0.0030 16 9 4.6589 -5.9376 -0.0046 17 6 3.1386 -4.1526 -0.0032 18 7 1.8603 -3.6874 -0.0031 19 1 -0.4850 0.8400 0.0004 20 1 0.2060 -6.6331 -0.0002 21 1 2.5163 -7.4624 -0.0029 22 1 3.9630 -3.4549 -0.0033 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312897.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:28 Heat of formation + Delta-G solvation = 50.523774 kcal Electronic energy + Delta-G solvation = -12741.169570 eV Core-core repulsion = 10212.262645 eV Total energy + Delta-G solvation = -2528.906925 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.40595 -41.57973 -36.58770 -33.99925 -32.66696 -29.44809 -28.82580 -25.76445 -23.17623 -21.98065 -21.07726 -17.99440 -17.20420 -16.68037 -15.45882 -15.43417 -15.26207 -14.43808 -14.19852 -13.68747 -13.10258 -12.77430 -11.79358 -11.47747 -11.31383 -10.95330 -10.93303 -10.49434 -10.31847 -10.06476 -9.48620 -8.81217 -8.14960 -7.31084 -6.88142 -4.71125 1.43766 2.10884 2.93458 2.95645 2.98802 3.54649 3.83108 3.90057 4.41027 4.85689 5.06661 5.07935 5.27025 5.57971 5.92832 6.35481 6.51291 6.57987 6.70170 6.93014 7.00451 7.37167 7.77667 7.91053 8.44910 8.53787 10.03709 10.28124 Molecular weight = 207.05amu Principal moments of inertia in cm(-1) A = 0.044886 B = 0.010646 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.653782 B = 2629.479007 C = 3243.281787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.073 3.927 3 Si 0.928 3.072 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.431 4.431 8 H 0.090 0.910 9 C 0.322 3.678 10 N -0.299 5.299 11 N -0.271 5.271 12 C 0.064 3.936 13 C -0.019 4.019 14 C -0.175 4.175 15 C 0.023 3.977 16 F -0.142 7.142 17 C 0.075 3.925 18 N -0.433 5.433 19 H 0.286 0.714 20 H 0.142 0.858 21 H 0.134 0.866 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 -3.975 0.024 7.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.153 4.153 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.108 0.892 9 C 0.086 3.914 10 N -0.146 5.146 11 N -0.117 5.117 12 C -0.182 4.182 13 C -0.041 4.041 14 C -0.200 4.200 15 C -0.002 4.002 16 F -0.121 7.121 17 C -0.051 4.051 18 N -0.121 5.121 19 H 0.097 0.903 20 H 0.160 0.840 21 H 0.152 0.848 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.175 -3.346 0.009 5.350 hybrid contribution 2.093 0.300 0.015 2.115 sum 6.268 -3.046 0.024 6.969 Atomic orbital electron populations 1.69999 1.07159 1.29555 1.28423 1.25862 0.95097 1.01037 0.93348 0.86036 0.79713 0.79109 0.80022 1.18697 1.19772 1.18702 1.18194 0.94357 0.87122 1.47294 0.89231 1.21696 0.89369 0.82578 0.97800 1.75773 1.07721 1.04973 1.26142 1.74753 1.21764 0.99648 1.15563 1.21484 0.85633 0.92439 1.18658 1.19804 0.96408 0.90804 0.97060 1.20639 0.91239 0.99267 1.08900 1.16436 0.79274 0.91056 1.13435 1.91427 1.36165 1.89406 1.95083 1.20973 0.87804 0.94309 1.02043 1.43366 1.04789 1.08713 1.55232 0.90332 0.84000 0.84788 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.13 11.93 55.55 0.66 -18.47 14 2 C 0.07 1.79 5.50 -17.29 -0.10 1.69 14 3 Si 0.93 17.65 29.56 -169.99 -5.03 12.62 14 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 7 C -0.43 -11.01 9.27 -38.40 -0.36 -11.37 14 8 H 0.09 2.05 7.85 -52.49 -0.41 1.64 14 9 C 0.32 8.83 7.59 -154.85 -1.17 7.65 14 10 N -0.30 -8.79 10.48 31.23 0.33 -8.46 14 11 N -0.27 -7.42 12.31 31.14 0.38 -7.04 14 12 C 0.06 1.55 7.89 -155.59 -1.23 0.32 14 13 C -0.02 -0.36 10.10 -39.43 -0.40 -0.75 14 14 C -0.18 -2.95 10.06 -39.39 -0.40 -3.35 14 15 C 0.02 0.42 7.26 -39.72 -0.29 0.13 14 16 F -0.14 -2.38 17.26 2.25 0.04 -2.34 14 17 C 0.07 1.51 10.86 -16.58 -0.18 1.33 14 18 N -0.43 -10.53 2.99 -61.96 -0.19 -10.72 14 19 H 0.29 6.71 8.30 -40.82 -0.34 6.38 14 20 H 0.14 2.21 8.06 -52.49 -0.42 1.79 14 21 H 0.13 1.79 8.06 -52.49 -0.42 1.36 14 22 H 0.16 2.78 8.06 -52.49 -0.42 2.35 14 LS Contribution 214.69 15.07 3.24 3.24 Total: -1.00 -30.13 214.69 -5.49 -35.62 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -0.81 Total: -0.11 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.12 Total: -4.34 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 1.19 Total: -44.69 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.13 -5.49 -35.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312897.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.145 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds