Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31247 * 1 3 3 Si 1.86803 * 120.00152 * 2 1 4 4 H 1.48499 * 109.47190 * 270.00164 * 3 2 1 5 5 H 1.48506 * 109.47042 * 29.99777 * 3 2 1 6 6 H 1.48497 * 109.47483 * 149.99686 * 3 2 1 7 7 C 1.39070 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99654 * 197.87183 * 7 2 1 9 9 N 1.37191 * 120.00164 * 17.87140 * 7 2 1 10 10 C 1.36025 * 119.87532 * 28.62658 * 9 7 2 11 11 N 1.30418 * 122.13807 * 179.72263 * 10 9 7 12 12 C 1.33901 * 121.29402 * 0.02562 * 11 10 9 13 13 O 1.34582 * 134.21441 * 179.97438 * 12 11 10 14 14 C 1.34348 * 108.22174 * 180.02562 * 13 12 11 15 15 N 1.30018 * 110.02751 * 0.02562 * 14 13 12 16 16 C 1.35553 * 108.63584 * 359.97438 * 15 14 13 17 17 C 1.35209 * 119.87403 * 208.35383 * 9 7 2 18 18 O 1.21881 * 120.92184 * 0.30044 * 17 9 7 19 19 H 0.97010 * 120.00160 * 0.02562 * 1 2 3 20 20 H 1.08009 * 118.93254 * 359.74823 * 10 9 7 21 21 H 1.08002 * 124.98710 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.4940 2.0464 -1.4001 5 1 1.4439 2.6527 0.7000 6 1 3.5440 1.4402 0.7001 7 6 2.0078 -1.2044 0.0005 8 1 3.0488 -1.2268 0.2876 9 7 1.3715 -2.3640 -0.3635 10 6 0.3324 -2.3202 -1.2403 11 7 -0.3002 -3.3954 -1.6207 12 6 0.0456 -4.6048 -1.1618 13 8 -0.4114 -5.8535 -1.3699 14 6 0.3269 -6.6994 -0.6322 15 7 1.2289 -6.0398 0.0324 16 6 1.1033 -4.7217 -0.2579 17 6 1.7831 -3.5467 0.1463 18 8 2.7124 -3.6001 0.9331 19 1 -0.4851 0.8401 -0.0004 20 1 0.0215 -1.3639 -1.6347 21 1 0.1912 -7.7703 -0.5965 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261322189.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = 25.316540 kcal Electronic energy + Delta-G solvation = -13073.986751 eV Core-core repulsion = 10531.613969 eV Total energy + Delta-G solvation = -2542.372783 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.043 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.63966 -40.00834 -36.43593 -34.74238 -33.84430 -32.02484 -28.82565 -26.37331 -23.87447 -23.30918 -21.10705 -19.27511 -18.41613 -17.63900 -16.39346 -15.88226 -15.08617 -14.71294 -14.32550 -13.79682 -13.66257 -13.18527 -12.31881 -11.93944 -11.54014 -11.33062 -10.75393 -10.65877 -10.49307 -10.07039 -9.30552 -9.09588 -8.84409 -7.46802 -7.14579 -4.83490 1.42255 2.43574 2.81910 2.88419 2.91279 2.97522 3.18965 3.50767 3.97995 4.12185 4.75051 4.80702 5.22701 5.29310 6.01844 6.12012 6.59769 6.72540 6.82652 7.22903 7.72114 8.00565 8.13345 8.39615 8.79657 9.07483 9.83709 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.064992 B = 0.010741 C = 0.009476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.721343 B = 2606.140207 C = 2954.148016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.047 3.953 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.334 4.334 8 H 0.126 0.874 9 N -0.338 5.338 10 C 0.379 3.621 11 N -0.546 5.546 12 C 0.253 3.747 13 O -0.209 6.209 14 C 0.148 3.852 15 N -0.424 5.424 16 C -0.176 4.176 17 C 0.532 3.468 18 O -0.536 6.536 19 H 0.293 0.707 20 H 0.219 0.781 21 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 -1.180 -3.788 4.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.164 4.164 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.143 0.857 9 N -0.038 5.038 10 C 0.100 3.900 11 N -0.283 5.283 12 C 0.077 3.923 13 O -0.095 6.095 14 C -0.083 4.083 15 N -0.152 5.152 16 C -0.299 4.299 17 C 0.331 3.669 18 O -0.415 6.415 19 H 0.105 0.895 20 H 0.235 0.765 21 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.215 -1.422 -3.313 3.804 hybrid contribution 0.150 0.679 0.251 0.739 sum -1.065 -0.743 -3.062 3.326 Atomic orbital electron populations 1.69723 1.06625 1.30751 1.39959 1.25798 0.95766 1.01451 0.93433 0.85514 0.79644 0.77931 0.79528 1.18850 1.19867 1.18328 1.20318 0.97621 0.81639 1.46683 0.85665 1.42872 1.24146 1.08313 1.28496 1.25101 0.84282 0.96198 0.84406 1.67315 1.33820 0.93481 1.33648 1.20617 0.91730 0.85454 0.94475 1.84204 1.52755 1.14327 1.58225 1.27844 0.90039 0.97310 0.93118 1.69986 1.20896 1.03097 1.21177 1.21116 1.05894 0.93011 1.09849 1.16073 0.85940 0.82037 0.82845 1.90757 1.29892 1.85873 1.34982 0.89539 0.76480 0.73287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.10 11.19 55.50 0.62 -18.48 14 2 C 0.05 1.05 4.99 -17.49 -0.09 0.96 14 3 Si 0.95 17.05 29.59 -169.99 -5.03 12.02 14 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 14 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 14 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 14 7 C -0.33 -8.29 9.13 -14.84 -0.14 -8.43 14 8 H 0.13 3.15 7.59 -52.48 -0.40 2.76 14 9 N -0.34 -8.63 2.75 -65.44 -0.18 -8.81 14 10 C 0.38 8.81 10.29 -89.54 -0.92 7.89 14 11 N -0.55 -12.67 10.41 -13.86 -0.14 -12.82 14 12 C 0.25 5.90 8.64 -16.13 -0.14 5.76 14 13 O -0.21 -4.16 10.75 4.82 0.05 -4.11 14 14 C 0.15 2.55 13.15 51.99 0.68 3.24 14 15 N -0.42 -9.58 11.33 -12.26 -0.14 -9.72 14 16 C -0.18 -4.43 7.24 -84.41 -0.61 -5.04 14 17 C 0.53 14.55 7.44 -14.77 -0.11 14.44 14 18 O -0.54 -15.97 16.97 5.03 0.09 -15.89 14 19 H 0.29 6.04 8.31 -40.82 -0.34 5.70 14 20 H 0.22 4.70 6.14 -52.48 -0.32 4.38 14 21 H 0.25 2.55 8.06 -52.49 -0.42 2.12 14 LS Contribution 205.27 15.07 3.09 3.09 Total: -1.00 -30.61 205.27 -3.24 -33.85 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -0.28 Total: 2.04 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: -1.32 Total: 18.82 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.16 Total: -49.82 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.14 Total: -20.00 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -30.61 -3.24 -33.85 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322189.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.162 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds