Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47076 * 299.99794 * 3 2 1 6 6 H 1.48504 * 109.47068 * 59.99891 * 3 2 1 7 7 C 1.40048 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99483 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00390 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99706 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00476 * 179.97438 * 9 7 2 12 12 C 1.46740 * 126.83483 * 0.02562 * 11 9 7 13 13 C 1.50794 * 107.50172 * 179.97438 * 12 11 9 14 14 C 1.40140 * 142.77709 * 180.02562 * 13 12 11 15 15 N 1.30761 * 108.19876 * 180.26435 * 14 13 12 16 16 N 1.40030 * 108.21037 * 359.58616 * 15 14 13 17 17 H 0.97002 * 126.05310 * 180.19891 * 16 15 14 18 18 C 1.35004 * 109.31702 * 0.02562 * 13 12 11 19 19 C 1.46748 * 126.84185 * 179.97438 * 11 9 7 20 20 H 0.97001 * 119.99367 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.84580 * 60.49524 * 12 11 9 22 22 H 1.08998 * 109.85026 * 299.46885 * 12 11 9 23 23 H 1.08002 * 125.89666 * 359.97438 * 14 13 12 24 24 H 1.09002 * 109.84725 * 60.53560 * 19 11 9 25 25 H 1.09007 * 109.93657 * 299.55331 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 3.4058 -3.8225 0.0011 13 6 3.6848 -5.3044 0.0015 14 6 4.7244 -6.2442 0.0024 15 7 4.1943 -7.4395 -0.0036 16 7 2.8009 -7.3003 0.0011 17 1 2.1549 -8.0239 0.0011 18 6 2.5154 -5.9790 0.0007 19 6 1.3716 -4.9969 0.0011 20 1 -0.4849 0.8401 0.0004 21 1 3.8330 -3.3654 0.8937 22 1 3.8337 -3.3656 -0.8912 23 1 5.7808 -6.0198 0.0028 24 1 0.7621 -5.1390 -0.8913 25 1 0.7611 -5.1396 0.8928 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306240230.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = 35.735978 kcal Electronic energy + Delta-G solvation = -12950.444421 eV Core-core repulsion = 10544.356554 eV Total energy + Delta-G solvation = -2406.087867 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.69300 -39.57506 -36.98034 -34.65664 -32.76224 -31.37459 -29.35835 -27.93120 -25.34727 -22.67516 -21.49495 -20.80115 -18.72717 -18.18385 -17.23874 -17.02251 -16.10590 -15.75507 -15.16605 -15.07978 -14.28843 -13.83916 -13.65601 -13.35842 -13.05021 -12.85043 -12.75029 -12.41739 -12.03715 -11.94070 -10.95231 -10.60199 -9.99725 -9.84717 -8.97319 -8.32885 -6.88044 0.70702 1.42997 1.43411 1.49712 1.63203 1.68652 2.24248 2.41408 2.64245 3.37898 3.54974 3.71307 3.95743 4.38134 4.44926 4.58816 4.82383 4.87846 5.16607 5.32503 5.43774 5.54598 5.95638 6.22380 6.35349 6.57992 6.84746 7.35418 8.36264 8.63032 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.063716 B = 0.008256 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.346521 B = 3390.788695 C = 3809.633873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.561 3.439 10 O -0.625 6.625 11 N -0.647 5.647 12 C 0.197 3.803 13 C -0.272 4.272 14 C 0.093 3.907 15 N -0.297 5.297 16 N -0.444 5.444 17 H 0.451 0.549 18 C 0.054 3.946 19 C 0.193 3.807 20 H 0.277 0.723 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.225 0.775 24 H 0.067 0.933 25 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -7.668 0.012 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.166 1.166 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.111 0.889 9 C 0.369 3.631 10 O -0.511 6.511 11 N -0.386 5.386 12 C 0.073 3.927 13 C -0.284 4.284 14 C -0.094 4.094 15 N -0.119 5.119 16 N -0.155 5.155 17 H 0.298 0.702 18 C -0.077 4.077 19 C 0.067 3.933 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.241 0.759 24 H 0.085 0.915 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.736 -8.763 0.007 12.373 hybrid contribution -0.681 0.957 0.001 1.175 sum 8.055 -7.805 0.007 11.216 Atomic orbital electron populations 1.70184 1.09599 1.29197 1.35931 1.27019 0.95549 1.04973 0.91069 0.84921 0.79527 0.75059 0.78542 1.16633 1.19345 1.19330 1.21388 0.94898 0.88918 1.54054 0.88888 1.18375 0.86253 0.82162 0.76283 1.90577 1.15828 1.86699 1.58026 1.48234 1.06834 1.03731 1.79833 1.19366 0.81458 0.90283 1.01604 1.21147 0.93719 0.96375 1.17160 1.23767 1.01044 0.86919 0.97620 1.77361 0.86224 1.22276 1.26071 1.45567 1.06169 1.03914 1.59803 0.70228 1.21270 0.98718 0.86468 1.01271 1.19284 0.91144 0.81241 1.01655 0.91329 0.91406 0.91399 0.75873 0.91520 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.22 11.83 21.84 0.26 -48.96 15 2 C 0.03 1.60 5.50 85.30 0.47 2.07 15 3 Si 1.00 39.71 29.56 68.60 2.03 41.74 15 4 H -0.24 -8.85 7.11 99.48 0.71 -8.14 15 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 6 H -0.27 -10.27 7.11 99.48 0.71 -9.57 15 7 C -0.56 -30.95 9.10 24.83 0.23 -30.72 15 8 H 0.09 4.63 7.23 -2.91 -0.02 4.60 15 9 C 0.56 32.65 7.81 86.36 0.67 33.32 15 10 O -0.62 -41.73 15.41 -4.33 -0.07 -41.80 15 11 N -0.65 -30.20 3.35 -834.07 -2.79 -32.99 15 12 C 0.20 7.33 6.18 85.62 0.53 7.86 15 13 C -0.27 -8.61 6.98 -20.12 -0.14 -8.75 15 14 C 0.09 2.34 12.03 85.31 1.03 3.37 15 15 N -0.30 -7.99 12.69 -56.88 -0.72 -8.71 15 16 N -0.44 -11.54 7.37 -48.01 -0.35 -11.89 15 17 H 0.45 8.53 8.96 -213.36 -1.91 6.62 15 18 C 0.05 1.71 8.16 41.31 0.34 2.04 15 19 C 0.19 7.51 6.94 85.60 0.59 8.11 15 20 H 0.28 14.94 8.29 -92.71 -0.77 14.17 15 21 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.22 3.66 8.06 -2.91 -0.02 3.64 15 24 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 25 H 0.07 2.62 8.14 -2.38 -0.02 2.60 15 Total: -1.00 -74.91 229.34 1.38 -73.52 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -0.68 Total: 11.80 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 3.72 Total: 17.30 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.61 Total: -102.56 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.07 Total: -41.80 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -74.91 1.38 -73.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306240230.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.261 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds