Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31372 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47019 * 269.99503 * 3 2 1 5 5 H 1.48500 * 109.47470 * 29.99954 * 3 2 1 6 6 H 1.48504 * 109.47344 * 150.00192 * 3 2 1 7 7 C 1.39047 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00292 * 180.02562 * 7 2 1 9 9 N 1.36801 * 120.00315 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00191 * 180.02562 * 9 7 2 11 11 O 1.21802 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.41560 * 119.99818 * 179.97438 * 10 9 7 13 13 C 1.35328 * 120.00171 * 179.97438 * 12 10 9 14 14 C 1.46732 * 120.00103 * 180.02562 * 13 12 10 15 15 C 1.36808 * 126.24654 * 180.02562 * 14 13 12 16 16 N 1.36068 * 106.70860 * 179.97438 * 15 14 13 17 17 H 0.97009 * 126.17749 * 179.97438 * 16 15 14 18 18 C 1.35858 * 107.64962 * 359.97438 * 16 15 14 19 19 N 1.30179 * 109.11483 * 0.26837 * 18 16 15 20 20 H 0.96995 * 120.00262 * 0.02562 * 1 2 3 21 21 H 0.97006 * 119.99449 * 359.97438 * 9 7 2 22 22 H 1.08004 * 120.00456 * 0.02562 * 12 10 9 23 23 H 1.07995 * 119.99570 * 0.02562 * 13 12 10 24 24 H 1.07998 * 126.64628 * 359.97438 * 15 14 13 25 25 H 1.08002 * 125.43938 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4953 2.0463 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0090 -1.2042 0.0005 8 1 3.0890 -1.2042 0.0010 9 7 1.3250 -2.3889 0.0005 10 6 1.9989 -3.5561 0.0016 11 8 3.2170 -3.5561 0.0021 12 6 1.2911 -4.7821 0.0021 13 6 1.9677 -5.9541 0.0027 14 6 1.2341 -7.2248 0.0027 15 6 1.7851 -8.4770 0.0036 16 7 0.7498 -9.3600 0.0038 17 1 0.8223 -10.3273 0.0041 18 6 -0.4037 -8.6423 0.0035 19 7 -0.1159 -7.3727 -0.0026 20 1 -0.4850 0.8400 -0.0004 21 1 0.3550 -2.3889 0.0005 22 1 0.2111 -4.7821 0.0013 23 1 3.0477 -5.9540 0.0031 24 1 2.8378 -8.7180 0.0042 25 1 -1.4003 -9.0585 0.0032 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306288370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = 7.544292 kcal Electronic energy + Delta-G solvation = -12258.615266 eV Core-core repulsion = 9851.304916 eV Total energy + Delta-G solvation = -2407.310351 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.71439 -40.24384 -36.17471 -34.77659 -33.33837 -32.72558 -30.09789 -27.30482 -24.46322 -22.80391 -21.29186 -20.41438 -19.80047 -18.67382 -17.89341 -16.67593 -15.89321 -15.84254 -15.33661 -15.23052 -14.83867 -14.52777 -14.10893 -13.48039 -12.95947 -12.79645 -12.45395 -12.10165 -11.67378 -11.46326 -11.03048 -10.55046 -10.46276 -10.07531 -8.92716 -8.52210 -5.95409 0.09095 1.32438 1.41109 1.46627 1.56110 2.23964 2.29556 2.36061 2.73444 3.34503 3.39070 3.68299 4.18506 4.38812 4.43711 4.58966 4.75742 4.99271 5.35720 5.46955 5.55000 5.73955 6.01802 6.56052 6.63929 7.06968 7.14502 7.50225 8.08342 8.65549 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.088687 B = 0.005730 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.639731 B = 4885.308036 C = 5191.105161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.015 4.015 3 Si 1.003 2.997 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.461 3.539 11 O -0.650 6.650 12 C -0.199 4.199 13 C 0.004 3.996 14 C -0.037 4.037 15 C 0.008 3.992 16 N -0.552 5.552 17 H 0.444 0.556 18 C 0.193 3.807 19 N -0.529 5.529 20 H 0.281 0.719 21 H 0.396 0.604 22 H 0.120 0.880 23 H 0.136 0.864 24 H 0.217 0.783 25 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -18.436 0.013 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.216 4.216 3 Si 0.825 3.175 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.192 5.192 10 C 0.254 3.746 11 O -0.542 6.542 12 C -0.221 4.221 13 C -0.019 4.019 14 C -0.161 4.161 15 C -0.130 4.130 16 N -0.157 5.157 17 H 0.287 0.713 18 C -0.093 4.093 19 N -0.249 5.249 20 H 0.091 0.909 21 H 0.229 0.771 22 H 0.138 0.862 23 H 0.153 0.847 24 H 0.234 0.766 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.516 -17.557 0.010 17.622 hybrid contribution 0.238 -0.028 -0.006 0.240 sum -1.278 -17.585 0.004 17.631 Atomic orbital electron populations 1.69681 1.07216 1.29794 1.48820 1.26275 0.96623 1.02950 0.95743 0.84796 0.77862 0.75942 0.78903 1.19263 1.19175 1.19404 1.19824 0.93120 0.84021 1.49587 0.89735 1.41991 1.09384 1.05210 1.62595 1.17373 0.87677 0.85336 0.84220 1.90571 1.15278 1.88596 1.59715 1.21722 1.00239 0.92285 1.07881 1.21470 0.98618 0.88963 0.92850 1.19679 0.90079 0.93195 1.13175 1.23341 0.95895 0.88364 1.05421 1.43319 1.05879 1.11212 1.55306 0.71331 1.25941 0.93924 0.86149 1.03284 1.70569 1.14520 1.19572 1.20213 0.90896 0.77051 0.86169 0.84673 0.76634 0.73497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.02 13.05 21.68 0.28 -51.74 15 2 C -0.02 -0.87 5.50 84.96 0.47 -0.40 15 3 Si 1.00 44.30 29.55 68.60 2.03 46.33 15 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.34 -20.42 9.68 84.11 0.81 -19.60 15 8 H 0.08 5.38 7.15 -2.91 -0.02 5.36 15 9 N -0.56 -32.35 5.27 -315.18 -1.66 -34.01 15 10 C 0.46 25.55 7.51 85.06 0.64 26.19 15 11 O -0.65 -39.70 15.68 -4.67 -0.07 -39.77 15 12 C -0.20 -9.07 9.43 22.42 0.21 -8.86 15 13 C 0.00 0.14 9.63 23.82 0.23 0.37 15 14 C -0.04 -1.14 6.85 40.41 0.28 -0.86 15 15 C 0.01 0.16 12.01 83.70 1.01 1.17 15 16 N -0.55 -7.00 6.12 -196.94 -1.21 -8.21 15 17 H 0.44 1.34 8.96 -92.70 -0.83 0.51 15 18 C 0.19 3.49 13.03 180.09 2.35 5.83 15 19 N -0.53 -16.22 10.87 -189.03 -2.05 -18.27 15 20 H 0.28 14.76 8.31 -92.71 -0.77 13.99 15 21 H 0.40 22.14 7.85 -92.70 -0.73 21.41 15 22 H 0.12 5.33 7.75 -2.91 -0.02 5.31 15 23 H 0.14 5.10 7.45 -2.91 -0.02 5.08 15 24 H 0.22 2.55 8.06 -2.91 -0.02 2.52 15 25 H 0.25 2.03 8.06 -2.91 -0.02 2.01 15 Total: -1.00 -80.81 239.07 2.99 -77.82 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.32 Total: 24.02 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.99 Total: 3.83 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.64 Total: -112.23 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.07 Total: -39.77 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -80.81 2.99 -77.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306288370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.364 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds