Wall clock time and date at job start Mon Mar 30 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 322.87033 * 3 2 1 5 5 H 1.09004 * 109.47346 * 305.00171 * 4 3 2 6 6 N 1.46905 * 109.47150 * 64.99785 * 4 3 2 7 7 C 1.50699 * 109.47337 * 185.00098 * 4 3 2 8 8 N 1.31121 * 126.05574 * 284.69183 * 7 4 3 9 9 N 1.28689 * 109.59155 * 179.82260 * 8 7 4 10 10 C 1.32853 * 109.00113 * 0.44277 * 9 8 7 11 11 C 1.39908 * 126.46521 * 179.70959 * 10 9 8 12 12 H 1.07995 * 119.99925 * 180.02562 * 11 10 9 13 13 C 1.40353 * 119.99852 * 0.02773 * 11 10 9 14 14 N 1.30625 * 120.00001 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99859 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47199 * 59.99723 * 15 13 11 17 17 H 1.48494 * 109.47310 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47306 * 299.99799 * 15 13 11 19 19 O 1.34303 * 126.05501 * 105.00234 * 7 4 3 20 20 H 4.44650 * 5.63319 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 22 22 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 23 23 H 1.00898 * 110.99705 * 60.00524 * 6 4 3 24 24 H 1.00897 * 110.99904 * 183.95433 * 6 4 3 25 25 H 0.97000 * 119.99431 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1491 0.8707 5 1 2.7219 -1.0710 1.8673 6 7 2.7684 -2.4307 0.2664 7 6 4.6584 -1.0752 0.9705 8 7 5.5116 -1.4111 0.0333 9 7 6.7125 -1.2184 0.4538 10 6 6.6660 -0.7541 1.6977 11 6 7.7610 -0.4261 2.5043 12 1 7.6020 -0.0555 3.5061 13 6 9.0663 -0.5785 2.0114 14 7 9.2587 -1.0271 0.7998 15 14 10.5283 -0.1399 3.0881 16 1 10.5082 -0.9762 4.3151 17 1 11.7866 -0.3896 2.3401 18 1 10.4526 1.2945 3.4654 19 8 5.3601 -0.6590 2.0373 20 1 -1.0499 -0.0001 0.0003 21 1 3.0094 -0.1267 -1.0197 22 1 3.0089 0.9477 0.3994 23 1 3.1594 -2.5273 -0.6587 24 1 3.0378 -3.2044 0.8553 25 1 10.1608 -1.1328 0.4594 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306289096.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:09 Heat of formation + Delta-G solvation = 41.264190 kcal Electronic energy + Delta-G solvation = -12714.887080 eV Core-core repulsion = 10309.038934 eV Total energy + Delta-G solvation = -2405.848146 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.81035 -37.75157 -36.16324 -35.76768 -33.76487 -31.46476 -29.77545 -28.02257 -24.97124 -23.62864 -21.90842 -19.72406 -19.07256 -17.69530 -17.33519 -17.08423 -16.85971 -15.83372 -15.40735 -15.12054 -14.26977 -13.80177 -13.57747 -13.27776 -13.05322 -12.83049 -12.53865 -12.10510 -11.95959 -11.52378 -11.13373 -11.02057 -10.88791 -10.26595 -9.90403 -8.80806 -7.02445 0.87652 1.36694 1.51888 1.55529 1.89956 2.04060 2.09005 2.20177 2.44227 3.02820 3.37589 3.63165 3.92583 4.10664 4.19799 4.64042 4.70318 4.83460 5.00531 5.21801 5.25845 5.51122 5.93011 5.96488 6.15700 6.34781 6.45214 6.83031 8.15030 8.38289 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.082088 B = 0.006959 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.013872 B = 4022.673083 C = 4151.978539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.203 4.203 3 C 0.006 3.994 4 C 0.226 3.774 5 H 0.104 0.896 6 N -0.807 5.807 7 C -0.008 4.008 8 N -0.298 5.298 9 N -0.405 5.405 10 C 0.258 3.742 11 C -0.448 4.448 12 H 0.111 0.889 13 C 0.026 3.974 14 N -0.766 5.766 15 Si 1.022 2.978 16 H -0.250 1.250 17 H -0.262 1.262 18 H -0.250 1.250 19 O -0.284 6.284 20 H 0.251 0.749 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.350 0.650 24 H 0.348 0.652 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 1.593 2.469 7.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C -0.032 4.032 4 C 0.111 3.889 5 H 0.122 0.878 6 N -0.335 5.335 7 C -0.223 4.223 8 N -0.147 5.147 9 N -0.259 5.259 10 C 0.074 3.926 11 C -0.483 4.483 12 H 0.129 0.871 13 C -0.197 4.197 14 N -0.390 5.390 15 Si 0.838 3.162 16 H -0.174 1.174 17 H -0.186 1.186 18 H -0.174 1.174 19 O -0.172 6.172 20 H 0.267 0.733 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.163 0.837 24 H 0.160 0.840 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.084 1.357 1.184 7.309 hybrid contribution 1.173 0.242 1.219 1.709 sum -5.911 1.599 2.403 6.578 Atomic orbital electron populations 1.25560 0.96440 0.99581 0.99255 1.22726 0.94080 1.01496 1.02009 1.18504 0.86263 0.97604 1.00799 1.19511 0.77759 0.91757 0.99852 0.87817 1.59296 1.63859 1.02512 1.07873 1.28996 0.99400 1.09807 0.84124 1.73907 0.97503 1.16140 1.27102 1.75640 1.10085 1.30241 1.09936 1.24365 0.81233 0.94470 0.92566 1.18884 0.87568 1.40846 1.01037 0.87063 1.27260 1.02895 0.92452 0.97063 1.70014 1.25980 1.26558 1.16418 0.84676 0.73501 0.80328 0.77655 1.17393 1.18551 1.17362 1.84726 1.19451 1.71339 1.41698 0.73292 0.89606 0.89406 0.83706 0.83973 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.47 19.25 74.32 1.43 -3.04 15 2 C -0.20 -5.85 13.06 31.12 0.41 -5.44 15 3 C 0.01 0.20 5.34 28.79 0.15 0.35 15 4 C 0.23 8.01 3.26 44.17 0.14 8.15 15 5 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 6 N -0.81 -25.34 8.92 -171.79 -1.53 -26.87 15 7 C -0.01 -0.38 7.29 88.21 0.64 0.26 15 8 N -0.30 -16.14 12.10 -164.72 -1.99 -18.13 15 9 N -0.40 -24.78 10.52 -169.75 -1.79 -26.57 15 10 C 0.26 15.21 7.85 84.94 0.67 15.88 15 11 C -0.45 -24.34 9.46 23.19 0.22 -24.12 15 12 H 0.11 5.45 7.85 -2.91 -0.02 5.43 15 13 C 0.03 1.29 5.50 85.39 0.47 1.76 15 14 N -0.77 -41.45 11.93 21.90 0.26 -41.19 15 15 Si 1.02 35.74 29.56 68.60 2.03 37.76 15 16 H -0.25 -8.27 7.11 99.48 0.71 -7.57 15 17 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 18 H -0.25 -8.26 7.11 99.48 0.71 -7.56 15 19 O -0.28 -15.33 10.90 -12.25 -0.13 -15.47 15 20 H 0.25 3.48 7.80 -4.42 -0.03 3.44 15 21 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 22 H 0.09 2.83 8.14 -2.39 -0.02 2.81 15 23 H 0.35 11.31 8.87 -89.70 -0.80 10.52 15 24 H 0.35 10.47 9.06 -89.70 -0.81 9.66 15 25 H 0.30 14.18 8.29 -92.71 -0.77 13.41 15 Total: -1.00 -68.72 242.57 0.61 -68.11 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.37 Total: 28.54 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.13 Total: -6.19 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.05 Total: -112.76 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.13 Total: -15.47 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.76 kcal Total: -68.72 0.61 -68.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306289096.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.379 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds