Wall clock time and date at job start Mon Mar 30 2020 02:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 120.00411 * 2 1 4 4 H 1.48505 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46948 * 299.99668 * 3 2 1 6 6 H 1.48498 * 109.47396 * 59.99478 * 3 2 1 7 7 C 1.38659 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.35760 * 116.99923 * 174.94113 * 9 7 2 11 11 C 1.39009 * 119.99371 * 185.26112 * 10 9 7 12 12 C 1.38193 * 120.23066 * 179.76239 * 11 10 9 13 13 C 1.38045 * 120.22451 * 0.51929 * 12 11 10 14 14 C 1.39641 * 119.98500 * 359.73650 * 13 12 11 15 15 C 1.47658 * 120.11255 * 180.02562 * 14 13 12 16 16 N 1.29323 * 120.00298 * 359.97438 * 15 14 13 17 17 O 1.41596 * 120.00139 * 180.02562 * 16 15 14 18 18 C 1.38591 * 119.99622 * 5.54001 * 10 9 7 19 19 H 0.97001 * 119.99832 * 0.02562 * 1 2 3 20 20 H 1.07994 * 119.88174 * 0.02562 * 11 10 9 21 21 H 1.08002 * 119.89168 * 180.25534 * 12 11 10 22 22 H 1.08003 * 120.00746 * 179.71908 * 13 12 11 23 23 H 1.08006 * 119.99558 * 179.97438 * 15 14 13 24 24 H 0.96702 * 114.00252 * 179.97438 * 17 16 15 25 25 H 1.07997 * 120.11045 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5047 -0.1056 11 6 1.4342 -4.7355 -0.2221 12 6 2.1779 -5.8947 -0.3354 13 6 3.5572 -5.8395 -0.3228 14 6 4.2053 -4.6086 -0.2008 15 6 5.6805 -4.5462 -0.1876 16 7 6.3746 -5.6327 -0.2886 17 8 7.7893 -5.5729 -0.2754 18 6 3.4541 -3.4381 -0.0919 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -4.7854 -0.2285 21 1 1.6784 -6.8476 -0.4298 22 1 4.1350 -6.7481 -0.4070 23 1 6.1798 -3.5931 -0.0936 24 1 8.2202 -6.4348 -0.3557 25 1 3.9497 -2.4832 0.0027 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306408311.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:50 Heat of formation + Delta-G solvation = -15.885738 kcal Electronic energy + Delta-G solvation = -12450.630037 eV Core-core repulsion = 10010.010933 eV Total energy + Delta-G solvation = -2440.619104 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79369 -38.63373 -37.58777 -34.65195 -34.08184 -31.35347 -30.30758 -27.33370 -24.79555 -23.29509 -21.38857 -19.88788 -18.66260 -18.52643 -16.77981 -16.49214 -16.25540 -15.90087 -15.56050 -15.17086 -14.74965 -14.36057 -14.18254 -13.52908 -13.17910 -12.66880 -12.47450 -12.39206 -12.07411 -11.35284 -11.33073 -11.05307 -10.75888 -9.54477 -9.01894 -8.45088 -6.13465 -0.16452 0.68577 1.38440 1.41003 1.50714 1.55906 2.00142 2.19467 2.86900 3.18719 3.50458 3.72139 4.12846 4.28819 4.37642 4.61610 4.64726 5.03530 5.10699 5.17717 5.39598 5.62784 5.64431 5.85364 6.02758 6.11239 6.76445 6.99967 7.78574 8.77995 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.034401 B = 0.008382 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.745389 B = 3339.881567 C = 4141.749969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.414 4.414 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.111 3.889 11 C -0.179 4.179 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.026 4.026 15 C 0.151 3.849 16 N -0.341 5.341 17 O -0.419 6.419 18 C -0.205 4.205 19 H 0.272 0.728 20 H 0.123 0.877 21 H 0.162 0.838 22 H 0.143 0.857 23 H 0.130 0.870 24 H 0.423 0.577 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 -8.218 -0.675 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.490 4.490 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.061 3.939 11 C -0.199 4.199 12 C -0.089 4.089 13 C -0.174 4.174 14 C -0.027 4.027 15 C -0.058 4.058 16 N -0.081 5.081 17 O -0.332 6.332 18 C -0.227 4.227 19 H 0.081 0.919 20 H 0.141 0.859 21 H 0.179 0.821 22 H 0.161 0.839 23 H 0.147 0.853 24 H 0.275 0.725 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.396 -8.411 -0.689 12.629 hybrid contribution 0.562 1.198 0.067 1.325 sum 9.958 -7.213 -0.621 12.311 Atomic orbital electron populations 1.70181 1.07982 1.28711 1.48842 1.26528 0.96795 1.02624 0.95889 0.84562 0.78383 0.75065 0.78444 1.17351 1.19522 1.19513 1.21865 0.92604 0.81362 1.53126 0.87819 1.83976 1.35568 1.12420 1.81469 1.19722 0.90982 0.88322 0.94860 1.20719 1.00596 0.90317 1.08250 1.21082 0.93390 0.97618 0.96827 1.21244 0.94596 0.96827 1.04694 1.18145 0.89007 0.93606 1.01942 1.24305 0.92765 0.96164 0.92602 1.76306 0.90993 1.26480 1.14329 1.88408 1.11633 1.38389 1.94782 1.21229 0.93117 0.98726 1.09581 0.91864 0.85861 0.82093 0.83925 0.85320 0.72517 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 13.67 21.61 0.30 -54.95 15 2 C -0.02 -1.14 5.49 84.84 0.47 -0.68 15 3 Si 1.02 41.89 29.55 68.60 2.03 43.92 15 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 15 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.41 -23.28 9.48 67.92 0.64 -22.64 15 8 H 0.10 5.31 5.20 -2.91 -0.02 5.29 15 9 O -0.23 -13.19 9.76 -22.86 -0.22 -13.41 15 10 C 0.11 5.29 6.64 22.54 0.15 5.44 15 11 C -0.18 -7.10 9.98 22.44 0.22 -6.88 15 12 C -0.07 -2.23 10.02 22.21 0.22 -2.01 15 13 C -0.15 -4.83 9.57 22.56 0.22 -4.62 15 14 C -0.03 -0.90 5.87 -20.14 -0.12 -1.02 15 15 C 0.15 4.70 10.90 87.55 0.95 5.66 15 16 N -0.34 -9.92 11.23 -52.24 -0.59 -10.51 15 17 O -0.42 -10.17 14.95 -38.77 -0.58 -10.75 15 18 C -0.21 -8.57 8.90 22.66 0.20 -8.37 15 19 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 20 H 0.12 4.74 8.06 -2.91 -0.02 4.72 15 21 H 0.16 3.66 8.06 -2.91 -0.02 3.64 15 22 H 0.14 3.85 7.55 -2.91 -0.02 3.83 15 23 H 0.13 3.68 8.06 -2.91 -0.02 3.65 15 24 H 0.42 5.57 9.28 -74.06 -0.69 4.88 15 25 H 0.13 5.40 5.63 -2.91 -0.02 5.38 15 Total: -1.00 -68.51 237.50 4.43 -64.08 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.54 Total: 16.75 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 2.96 Total: -35.12 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.29 Total: -65.46 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.80 Total: -24.16 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -68.51 4.43 -64.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306408311.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.195 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds