Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47120 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46981 * 119.99954 * 3 2 1 6 6 H 1.48490 * 109.47313 * 239.99904 * 3 2 1 7 7 C 1.40038 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00127 * 154.24721 * 7 2 1 9 9 C 1.40716 * 119.99697 * 334.24981 * 7 2 1 10 10 C 1.40841 * 120.70263 * 334.83222 * 9 7 2 11 11 C 1.37566 * 120.03599 * 180.02562 * 10 9 7 12 12 C 1.38547 * 121.42982 * 0.02562 * 11 10 9 13 13 C 1.38556 * 121.02305 * 0.02562 * 12 11 10 14 14 O 1.35252 * 133.93057 * 180.02562 * 13 12 11 15 15 C 1.34246 * 107.96650 * 179.23614 * 14 13 12 16 16 F 1.35093 * 124.98086 * 180.02562 * 15 14 13 17 17 N 1.30656 * 110.03698 * 0.65456 * 15 14 13 18 18 C 1.34588 * 108.89768 * 359.42379 * 17 15 14 19 19 H 0.97005 * 119.99840 * 174.40403 * 1 2 3 20 20 H 1.08001 * 119.98370 * 0.02562 * 10 9 7 21 21 H 1.07997 * 119.28278 * 180.02562 * 11 10 9 22 22 H 1.08009 * 119.48701 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7464 0.0006 5 1 3.0959 1.6963 1.2125 6 1 3.0959 1.6964 -1.2124 7 6 2.0084 -1.2128 -0.0005 8 1 3.0079 -1.2590 -0.4069 9 6 1.4096 -2.3711 0.5284 10 6 0.3953 -2.2762 1.5009 11 6 -0.1804 -3.4176 2.0091 12 6 0.2151 -4.6762 1.5859 13 6 1.2087 -4.8295 0.6325 14 8 1.7857 -5.9010 0.0423 15 6 2.6973 -5.4503 -0.8340 16 9 3.4756 -6.2326 -1.6133 17 7 2.7309 -4.1443 -0.8130 18 6 1.8248 -3.6992 0.0770 19 1 -0.4850 -0.8361 -0.0819 20 1 0.0692 -1.3068 1.8479 21 1 -0.9574 -3.3307 2.7541 22 1 -0.2585 -5.5515 2.0057 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306921776.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = -34.547725 kcal Electronic energy + Delta-G solvation = -12735.022451 eV Core-core repulsion = 10170.133798 eV Total energy + Delta-G solvation = -2564.888653 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 207.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.42911 -43.96609 -38.77868 -35.87011 -35.68482 -31.31950 -30.29547 -27.21778 -24.42189 -23.73238 -22.65592 -20.04835 -19.53616 -18.60248 -18.53518 -17.34535 -16.09421 -15.94849 -15.85164 -15.73991 -14.76693 -14.69949 -14.03574 -13.26383 -12.83785 -12.73445 -12.48891 -12.19455 -12.02647 -11.86940 -11.32973 -11.03547 -9.74137 -9.63300 -9.25474 -6.67694 -0.08965 0.63572 0.93992 1.40924 1.51926 1.63403 1.83383 2.23745 2.42762 2.61152 3.20087 3.93959 4.18719 4.32767 4.48449 4.70126 4.98203 5.19578 5.24307 5.39989 5.58901 5.68605 5.86144 5.98132 6.24204 6.47087 6.70639 7.71033 Molecular weight = 207.04amu Principal moments of inertia in cm(-1) A = 0.039173 B = 0.011114 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.603594 B = 2518.757413 C = 3128.980520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.007 3.993 3 Si 1.120 2.880 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.261 1.261 7 C -0.472 4.472 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.266 4.266 11 C -0.015 4.015 12 C -0.261 4.261 13 C 0.064 3.936 14 O -0.230 6.230 15 C 0.299 3.701 16 F -0.041 7.041 17 N -0.450 5.450 18 C -0.113 4.113 19 H 0.296 0.704 20 H 0.119 0.881 21 H 0.154 0.846 22 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -0.738 2.092 2.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.215 4.215 3 Si 0.935 3.065 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.286 4.286 11 C -0.034 4.034 12 C -0.281 4.281 13 C 0.014 3.986 14 O -0.126 6.126 15 C 0.078 3.922 16 F -0.021 7.021 17 N -0.186 5.186 18 C -0.230 4.230 19 H 0.109 0.891 20 H 0.137 0.863 21 H 0.172 0.828 22 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.536 1.158 1.731 2.150 hybrid contribution 0.097 -2.897 -0.206 2.906 sum 0.634 -1.739 1.525 2.398 Atomic orbital electron populations 1.70555 1.08674 1.34414 1.24809 1.28791 0.95591 1.07347 0.89758 0.82961 0.74930 0.69121 0.79500 1.18436 1.18128 1.18499 1.21076 1.03073 0.94558 1.30974 0.90157 1.18199 0.91454 0.88106 0.90917 1.20986 1.05302 0.98753 1.03591 1.20779 0.96391 0.89975 0.96225 1.19277 1.04166 0.98863 1.05782 1.20378 0.97902 0.82469 0.97828 1.84248 1.45757 1.35754 1.46799 1.20416 0.93638 0.83470 0.94627 1.91752 1.68841 1.72649 1.68867 1.69833 1.21949 1.05922 1.20906 1.20603 1.03020 0.96032 1.03299 0.89102 0.86304 0.82829 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.38 12.33 21.85 0.27 -36.11 14 2 C 0.01 0.33 4.95 85.28 0.42 0.75 14 3 Si 1.12 38.21 30.00 68.60 2.06 40.27 14 4 H -0.26 -8.50 7.11 99.48 0.71 -7.79 14 5 H -0.26 -8.26 7.11 99.48 0.71 -7.55 14 6 H -0.26 -8.46 7.11 99.48 0.71 -7.75 14 7 C -0.47 -24.14 9.02 23.31 0.21 -23.92 14 8 H 0.08 4.20 7.96 -2.91 -0.02 4.18 14 9 C 0.12 6.13 5.45 -19.94 -0.11 6.02 14 10 C -0.27 -12.30 7.96 22.75 0.18 -12.12 14 11 C -0.02 -0.61 9.95 22.18 0.22 -0.39 14 12 C -0.26 -10.83 10.01 22.42 0.22 -10.61 14 13 C 0.06 3.04 7.42 22.82 0.17 3.21 14 14 O -0.23 -10.52 10.79 -11.56 -0.12 -10.64 14 15 C 0.30 13.61 10.32 130.42 1.35 14.96 14 16 F -0.04 -1.59 17.32 44.97 0.78 -0.81 14 17 N -0.45 -23.18 11.30 -304.48 -3.44 -26.62 14 18 C -0.11 -5.92 7.20 41.29 0.30 -5.62 14 19 H 0.30 14.61 6.69 -92.70 -0.62 13.99 14 20 H 0.12 5.43 6.51 -2.91 -0.02 5.41 14 21 H 0.15 4.72 8.06 -2.91 -0.02 4.70 14 22 H 0.14 4.71 8.06 -2.91 -0.02 4.69 14 Total: -1.00 -55.70 212.65 3.91 -51.78 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.41 Total: 9.86 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 2.96 Total: -27.73 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -3.17 Total: -62.73 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.12 Total: -10.64 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.78 Total: -0.81 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.06 Total: 40.27 kcal Total: -55.70 3.91 -51.78 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306921776.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.235 kcal (2) G-P(sol) polarization free energy of solvation -55.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds