Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31316 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48502 * 109.47128 * 269.99668 * 3 2 1 5 5 H 1.48500 * 109.47102 * 30.00126 * 3 2 1 6 6 H 1.48504 * 109.46794 * 149.99951 * 3 2 1 7 7 C 1.39105 * 120.00629 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99668 * 359.97438 * 7 2 1 9 9 N 1.36775 * 120.00522 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00115 * 180.02562 * 9 7 2 11 11 O 1.21570 * 120.00490 * 359.97438 * 10 9 7 12 12 C 1.47986 * 120.00038 * 180.02562 * 10 9 7 13 13 C 1.39246 * 119.68973 * 180.25388 * 12 10 9 14 14 C 1.38744 * 119.22234 * 180.22770 * 13 12 10 15 15 C 1.38339 * 118.58780 * 359.51873 * 14 13 12 16 16 C 1.39452 * 119.30830 * 0.25508 * 15 14 13 17 17 N 1.38974 * 119.63189 * 180.02562 * 16 15 14 18 18 N 1.32086 * 120.73324 * 359.97438 * 16 15 14 19 19 H 0.96993 * 120.00769 * 0.02562 * 1 2 3 20 20 H 0.96996 * 119.99894 * 359.97438 * 9 7 2 21 21 H 1.08006 * 120.39190 * 0.02562 * 13 12 10 22 22 H 1.08002 * 120.70933 * 179.80059 * 14 13 12 23 23 H 1.08001 * 120.34236 * 180.23258 * 15 14 13 24 24 H 0.97005 * 119.99754 * 359.97438 * 17 16 15 25 25 H 0.96999 * 120.00399 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.4947 2.0465 -1.4001 5 1 1.4445 2.6527 0.7001 6 1 3.5447 1.4402 0.7001 7 6 2.0088 -1.2046 -0.0005 8 1 1.4688 -2.1400 -0.0005 9 7 3.3766 -1.2046 0.0000 10 6 4.0505 -2.3717 -0.0011 11 8 3.4428 -3.4246 -0.0020 12 6 5.5303 -2.3717 0.0001 13 6 6.2201 -3.5813 -0.0064 14 6 7.6075 -3.5700 -0.0004 15 6 8.2595 -2.3499 0.0016 16 6 7.5087 -1.1747 0.0030 17 7 8.1568 0.0547 0.0045 18 7 6.1885 -1.2171 0.0020 19 1 -0.4851 0.8399 -0.0004 20 1 3.8615 -0.3646 0.0004 21 1 5.6814 -4.5174 -0.0126 22 1 8.1666 -4.4940 -0.0020 23 1 9.3387 -2.3080 0.0024 24 1 9.1261 0.0919 0.0049 25 1 7.6399 0.8755 0.0058 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306984403.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -22.506641 kcal Electronic energy + Delta-G solvation = -12791.239928 eV Core-core repulsion = 10382.626471 eV Total energy + Delta-G solvation = -2408.613457 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.36987 -39.73688 -36.23686 -35.46994 -34.04520 -33.16655 -30.27706 -27.53045 -24.96468 -23.54781 -21.61530 -20.74043 -18.68939 -18.19334 -17.14524 -16.82718 -16.60240 -15.98379 -15.64025 -15.40207 -14.78585 -14.73612 -14.36554 -13.91405 -13.08738 -12.89596 -12.50972 -12.06201 -11.77028 -11.59993 -11.08341 -10.73110 -10.36278 -10.32543 -8.81590 -8.55198 -6.10296 -0.14150 0.57090 1.26421 1.29821 1.39914 1.94853 2.14302 2.52348 2.83559 2.90814 3.24795 3.62266 4.06238 4.23037 4.32874 4.61222 4.67794 5.12009 5.32394 5.44124 5.66638 5.83694 6.35288 6.43876 6.54554 6.73079 7.22639 7.37859 7.80674 8.60948 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.038965 B = 0.010313 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.427543 B = 2714.249260 C = 3422.832951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.244 1.244 7 C -0.336 4.336 8 H 0.067 0.933 9 N -0.554 5.554 10 C 0.479 3.521 11 O -0.620 6.620 12 C 0.124 3.876 13 C -0.191 4.191 14 C -0.030 4.030 15 C -0.211 4.211 16 C 0.387 3.613 17 N -0.838 5.838 18 N -0.562 5.562 19 H 0.286 0.714 20 H 0.394 0.606 21 H 0.131 0.869 22 H 0.180 0.820 23 H 0.178 0.822 24 H 0.424 0.576 25 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.401 2.711 0.012 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.203 4.203 3 Si 0.776 3.224 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.168 1.168 7 C -0.465 4.465 8 H 0.085 0.915 9 N -0.191 5.191 10 C 0.267 3.733 11 O -0.507 6.507 12 C -0.012 4.012 13 C -0.215 4.215 14 C -0.056 4.056 15 C -0.236 4.236 16 C 0.146 3.854 17 N -0.385 5.385 18 N -0.285 5.285 19 H 0.096 0.904 20 H 0.231 0.769 21 H 0.149 0.851 22 H 0.197 0.803 23 H 0.195 0.805 24 H 0.257 0.743 25 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 20.263 2.885 0.013 20.467 hybrid contribution 0.102 0.403 0.004 0.416 sum 20.365 3.288 0.017 20.628 Atomic orbital electron populations 1.69714 1.07828 1.29882 1.47510 1.26086 0.96491 1.02443 0.95287 0.85470 0.79346 0.77172 0.80377 1.17739 1.18453 1.16780 1.19193 0.81024 0.95699 1.50567 0.91507 1.41940 1.06122 1.07869 1.63149 1.18167 0.86909 0.83816 0.84436 1.90590 1.69802 1.32308 1.58006 1.20589 0.92160 0.90067 0.98400 1.21874 0.96198 0.97774 1.05695 1.21712 0.91977 0.99879 0.91997 1.21928 1.02453 0.90655 1.08541 1.18723 0.87404 0.88746 0.90526 1.42114 1.09844 1.03607 1.82886 1.66926 1.09990 1.29598 1.21993 0.90407 0.76921 0.85122 0.80289 0.80511 0.74256 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.08 13.95 21.69 0.30 -54.78 15 2 C 0.00 -0.07 5.50 84.98 0.47 0.40 15 3 Si 0.96 41.29 27.74 68.60 1.90 43.19 15 4 H -0.25 -10.33 7.11 99.48 0.71 -9.62 15 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.24 -9.74 6.52 99.48 0.65 -9.09 15 7 C -0.34 -20.86 10.16 84.13 0.85 -20.00 15 8 H 0.07 4.79 7.38 -2.91 -0.02 4.77 15 9 N -0.55 -30.21 5.07 -309.53 -1.57 -31.78 15 10 C 0.48 25.68 7.76 86.83 0.67 26.35 15 11 O -0.62 -37.75 15.89 -3.94 -0.06 -37.82 15 12 C 0.12 5.24 6.74 41.81 0.28 5.52 15 13 C -0.19 -6.54 9.63 22.63 0.22 -6.32 15 14 C -0.03 -0.69 10.16 22.41 0.23 -0.46 15 15 C -0.21 -4.23 9.94 22.59 0.22 -4.01 15 16 C 0.39 10.17 7.74 133.24 1.03 11.20 15 17 N -0.84 -14.47 9.07 -55.42 -0.50 -14.97 15 18 N -0.56 -20.64 9.57 -182.42 -1.75 -22.39 15 19 H 0.29 15.60 8.31 -92.71 -0.77 14.83 15 20 H 0.39 19.29 5.08 -92.71 -0.47 18.82 15 21 H 0.13 4.67 7.63 -2.91 -0.02 4.65 15 22 H 0.18 2.43 8.06 -2.91 -0.02 2.40 15 23 H 0.18 1.84 8.06 -2.91 -0.02 1.82 15 24 H 0.42 3.86 8.82 -92.70 -0.82 3.05 15 25 H 0.41 7.07 8.95 -92.71 -0.83 6.24 15 Total: -1.00 -79.29 231.94 1.39 -77.90 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.92 Total: 27.96 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 3.98 Total: 12.68 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -3.52 Total: -123.91 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.06 Total: -37.82 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.90 Total: 43.19 kcal Total: -79.29 1.39 -77.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306984403.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.393 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds