Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30556 * 1 3 3 Si 1.86795 * 120.00044 * 2 1 4 4 H 1.48497 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47177 * 299.99397 * 3 2 1 6 6 H 1.48501 * 109.47550 * 59.99486 * 3 2 1 7 7 C 1.40695 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 180.02562 * 7 2 1 9 9 N 1.32703 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.32095 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.46114 * 120.00240 * 180.02562 * 10 9 7 12 12 C 1.40497 * 120.23345 * 180.25658 * 11 10 9 13 13 C 1.37550 * 119.92947 * 180.32669 * 12 11 10 14 14 C 1.38715 * 120.41417 * 359.66692 * 13 12 11 15 15 C 1.38580 * 120.47381 * 0.05654 * 14 13 12 16 16 O 1.36007 * 119.96925 * 180.02562 * 15 14 13 17 17 C 1.38962 * 120.05644 * 359.96608 * 15 14 13 18 18 O 1.35755 * 120.20605 * 180.02562 * 17 15 14 19 19 H 0.97003 * 120.00167 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.99766 * 0.02562 * 10 9 7 21 21 H 1.08001 * 120.03133 * 359.97438 * 12 11 10 22 22 H 1.07993 * 119.78902 * 179.70124 * 13 12 11 23 23 H 1.08002 * 119.76100 * 180.02562 * 14 13 12 24 24 H 0.96708 * 113.99798 * 269.96870 * 16 15 14 25 25 H 0.96701 * 113.99721 * 90.00829 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 0.0006 5 1 1.8809 2.3963 -1.2126 6 1 1.8808 2.3965 1.2124 7 6 2.0090 -1.2185 0.0005 8 1 3.0890 -1.2185 0.0010 9 7 1.3454 -2.3677 0.0016 10 6 2.0058 -3.5117 0.0026 11 6 1.2752 -4.7771 0.0032 12 6 1.9727 -5.9967 0.0097 13 6 1.2787 -7.1842 0.0034 14 6 -0.1084 -7.1869 -0.0024 15 6 -0.8135 -5.9939 -0.0032 16 8 -2.1735 -6.0085 -0.0084 17 6 -0.1323 -4.7828 0.0027 18 8 -0.8200 -3.6123 0.0025 19 1 -0.4850 0.8401 -0.0004 20 1 3.0858 -3.5117 0.0030 21 1 3.0527 -6.0016 0.0139 22 1 1.8172 -8.1203 0.0035 23 1 -0.6427 -8.1255 -0.0069 24 1 -2.5634 -6.0108 -0.8934 25 1 -1.0229 -3.2753 0.8858 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307010685.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -54.664872 kcal Electronic energy + Delta-G solvation = -12781.603622 eV Core-core repulsion = 10339.302929 eV Total energy + Delta-G solvation = -2442.300693 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.91981 -36.16811 -35.20626 -35.05934 -32.64334 -29.55768 -28.11704 -25.56587 -22.45565 -21.39124 -19.57780 -17.40668 -17.18971 -16.86123 -15.68381 -14.86384 -14.54577 -14.39935 -13.53444 -13.02349 -12.87243 -12.19488 -11.84459 -11.59228 -11.44784 -11.18560 -10.96209 -10.64897 -10.50220 -10.20643 -9.21082 -9.01810 -7.72009 -7.53731 -7.32575 -7.29162 -4.59490 2.01497 2.17651 2.75125 2.82087 2.89480 3.56357 3.62869 4.50230 4.98708 5.44001 5.62595 5.74275 6.03699 6.20200 6.38449 6.50154 6.66395 6.91841 7.09694 7.18291 7.29542 7.43963 7.60741 7.78823 7.92926 8.32664 8.64311 9.08065 9.57485 10.40994 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055713 B = 0.008353 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.453450 B = 3351.405675 C = 3838.745353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.067 3.933 3 Si 0.934 3.066 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.222 4.222 8 H 0.059 0.941 9 N -0.300 5.300 10 C -0.213 4.213 11 C 0.047 3.953 12 C -0.173 4.173 13 C -0.100 4.100 14 C -0.211 4.211 15 C 0.084 3.916 16 O -0.502 6.502 17 C 0.044 3.956 18 O -0.456 6.456 19 H 0.292 0.708 20 H 0.060 0.940 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.380 0.620 25 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -2.528 -0.035 2.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.163 4.163 3 Si 0.756 3.244 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.386 4.386 8 H 0.077 0.923 9 N -0.012 5.012 10 C -0.377 4.377 11 C 0.045 3.955 12 C -0.193 4.193 13 C -0.118 4.118 14 C -0.230 4.230 15 C 0.040 3.960 16 O -0.311 6.311 17 C -0.004 4.004 18 O -0.264 6.264 19 H 0.103 0.897 20 H 0.077 0.923 21 H 0.129 0.871 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.234 0.766 25 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.703 -2.367 -0.032 2.469 hybrid contribution 1.170 0.673 -0.034 1.350 sum 0.467 -1.695 -0.066 1.759 Atomic orbital electron populations 1.69657 1.08268 1.30629 1.24291 1.26643 0.95135 1.02217 0.92291 0.85773 0.80791 0.78519 0.79311 1.17636 1.18909 1.18909 1.21055 0.92450 0.89901 1.35166 0.92312 1.66964 1.40074 0.97692 0.96443 1.21963 0.92433 0.89236 1.34069 1.19170 0.91319 0.93077 0.91971 1.20893 0.98840 0.91373 1.08224 1.20570 0.93341 0.97175 1.00753 1.20815 0.94219 0.96297 1.11701 1.18837 0.82103 0.92165 1.02943 1.84729 1.16922 1.96641 1.32784 1.18965 0.89608 0.85003 1.06847 1.84795 1.74446 1.35381 1.31740 0.89719 0.92272 0.87129 0.87325 0.87256 0.76612 0.77302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.36 13.58 55.59 0.76 -16.60 15 2 C 0.07 1.59 5.53 -17.17 -0.09 1.49 15 3 Si 0.93 16.83 29.57 -169.99 -5.03 11.80 15 4 H -0.25 -4.52 7.11 56.52 0.40 -4.11 15 5 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 6 H -0.26 -4.59 7.11 56.52 0.40 -4.18 15 7 C -0.22 -5.87 9.74 -16.25 -0.16 -6.03 15 8 H 0.06 1.50 7.75 -52.49 -0.41 1.09 15 9 N -0.30 -8.45 7.81 -10.28 -0.08 -8.53 15 10 C -0.21 -5.72 10.39 -14.28 -0.15 -5.87 15 11 C 0.05 1.15 5.88 -104.94 -0.62 0.53 15 12 C -0.17 -3.65 9.80 -38.98 -0.38 -4.03 15 13 C -0.10 -1.87 10.01 -39.66 -0.40 -2.27 15 14 C -0.21 -4.05 9.97 -39.28 -0.39 -4.45 15 15 C 0.08 1.80 6.71 -39.19 -0.26 1.53 15 16 O -0.50 -9.63 13.28 -34.39 -0.46 -10.09 15 17 C 0.04 1.05 6.75 -38.36 -0.26 0.80 15 18 O -0.46 -11.54 11.14 -33.60 -0.37 -11.91 15 19 H 0.29 6.18 8.29 -40.82 -0.34 5.84 15 20 H 0.06 1.56 7.95 -52.49 -0.42 1.14 15 21 H 0.11 2.11 8.06 -52.49 -0.42 1.69 15 22 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 23 H 0.11 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.38 5.59 9.07 45.56 0.41 6.00 15 25 H 0.37 8.76 9.06 45.56 0.41 9.18 15 LS Contribution 237.79 15.07 3.58 3.58 Total: -1.00 -30.29 237.79 -4.71 -35.00 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.40 Total: 15.05 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.71 Total: -18.29 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.67 Total: -25.13 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.83 Total: -22.00 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.29 -4.71 -35.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307010685.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.667 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds