Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30556 * 1 3 3 Si 1.86795 * 120.00044 * 2 1 4 4 H 1.48497 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47177 * 299.99397 * 3 2 1 6 6 H 1.48501 * 109.47550 * 59.99486 * 3 2 1 7 7 C 1.40695 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 180.02562 * 7 2 1 9 9 N 1.32703 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.32095 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.46114 * 120.00240 * 180.02562 * 10 9 7 12 12 C 1.40497 * 120.23345 * 180.25658 * 11 10 9 13 13 C 1.37550 * 119.92947 * 180.32669 * 12 11 10 14 14 C 1.38715 * 120.41417 * 359.66692 * 13 12 11 15 15 C 1.38580 * 120.47381 * 0.05654 * 14 13 12 16 16 O 1.36007 * 119.96925 * 180.02562 * 15 14 13 17 17 C 1.38962 * 120.05644 * 359.96608 * 15 14 13 18 18 O 1.35755 * 120.20605 * 180.02562 * 17 15 14 19 19 H 0.97003 * 120.00167 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.99766 * 0.02562 * 10 9 7 21 21 H 1.08001 * 120.03133 * 359.97438 * 12 11 10 22 22 H 1.07993 * 119.78902 * 179.70124 * 13 12 11 23 23 H 1.08002 * 119.76100 * 180.02562 * 14 13 12 24 24 H 0.96708 * 113.99798 * 269.96870 * 16 15 14 25 25 H 0.96701 * 113.99721 * 90.00829 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 0.0006 5 1 1.8809 2.3963 -1.2126 6 1 1.8808 2.3965 1.2124 7 6 2.0090 -1.2185 0.0005 8 1 3.0890 -1.2185 0.0010 9 7 1.3454 -2.3677 0.0016 10 6 2.0058 -3.5117 0.0026 11 6 1.2752 -4.7771 0.0032 12 6 1.9727 -5.9967 0.0097 13 6 1.2787 -7.1842 0.0034 14 6 -0.1084 -7.1869 -0.0024 15 6 -0.8135 -5.9939 -0.0032 16 8 -2.1735 -6.0085 -0.0084 17 6 -0.1323 -4.7828 0.0027 18 8 -0.8200 -3.6123 0.0025 19 1 -0.4850 0.8401 -0.0004 20 1 3.0858 -3.5117 0.0030 21 1 3.0527 -6.0016 0.0139 22 1 1.8172 -8.1203 0.0035 23 1 -0.6427 -8.1255 -0.0069 24 1 -2.5634 -6.0108 -0.8934 25 1 -1.0229 -3.2753 0.8858 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307010685.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = -77.933776 kcal Electronic energy + Delta-G solvation = -12782.612638 eV Core-core repulsion = 10339.302929 eV Total energy + Delta-G solvation = -2443.309709 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61035 -37.87280 -37.00242 -36.87964 -34.50444 -31.30178 -29.79659 -27.43182 -24.24306 -23.06273 -21.36241 -19.33514 -18.87256 -18.62173 -17.45222 -16.47411 -16.16941 -16.09592 -15.23780 -14.80424 -14.57589 -13.87582 -13.59130 -13.34638 -13.09508 -12.82937 -12.62062 -12.15904 -12.07551 -11.85338 -10.98289 -10.79574 -9.44590 -9.35278 -9.23401 -9.07500 -6.56574 0.33525 0.49511 1.27664 1.32436 1.53337 1.94439 2.07356 2.81834 3.41157 3.54233 3.84870 4.26625 4.37882 4.61688 4.67813 4.68259 4.95608 5.18888 5.30228 5.44843 5.60688 5.64834 5.92058 5.98551 6.16378 6.70408 6.84746 7.24890 7.85063 8.46309 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.055713 B = 0.008353 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.453450 B = 3351.405675 C = 3838.745353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.028 3.972 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.251 1.251 6 H -0.249 1.249 7 C -0.265 4.265 8 H 0.057 0.943 9 N -0.328 5.328 10 C -0.241 4.241 11 C 0.013 3.987 12 C -0.173 4.173 13 C -0.087 4.087 14 C -0.192 4.192 15 C 0.083 3.917 16 O -0.506 6.506 17 C 0.009 3.991 18 O -0.473 6.473 19 H 0.307 0.693 20 H 0.050 0.950 21 H 0.126 0.874 22 H 0.158 0.842 23 H 0.148 0.852 24 H 0.401 0.599 25 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 -3.758 -0.119 3.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.198 4.198 3 Si 0.834 3.166 4 H -0.176 1.176 5 H -0.175 1.175 6 H -0.172 1.172 7 C -0.427 4.427 8 H 0.074 0.926 9 N -0.040 5.040 10 C -0.407 4.407 11 C 0.011 3.989 12 C -0.192 4.192 13 C -0.105 4.105 14 C -0.212 4.212 15 C 0.038 3.962 16 O -0.317 6.317 17 C -0.038 4.038 18 O -0.281 6.281 19 H 0.118 0.882 20 H 0.068 0.932 21 H 0.144 0.856 22 H 0.175 0.825 23 H 0.165 0.835 24 H 0.258 0.742 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.592 -3.625 -0.130 3.675 hybrid contribution 1.037 0.765 -0.016 1.289 sum 0.445 -2.860 -0.146 2.898 Atomic orbital electron populations 1.69664 1.09962 1.32746 1.24614 1.27778 0.95999 1.05238 0.90796 0.84610 0.78839 0.72907 0.80227 1.17636 1.17521 1.17231 1.21503 0.92834 0.90952 1.37398 0.92572 1.67027 1.40807 0.98555 0.97578 1.22253 0.92364 0.90358 1.35689 1.19405 0.91958 0.93522 0.94017 1.21200 0.99880 0.91039 1.07130 1.21077 0.93368 0.98023 0.98020 1.21302 0.94670 0.96756 1.08429 1.18931 0.83023 0.91842 1.02423 1.84673 1.15869 1.96510 1.34677 1.19358 0.89890 0.85657 1.08892 1.84770 1.74752 1.36670 1.31899 0.88179 0.93208 0.85582 0.82486 0.83471 0.74220 0.77571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.79 13.58 21.97 0.30 -37.49 15 2 C 0.03 1.35 5.53 85.48 0.47 1.83 15 3 Si 1.02 34.49 29.57 68.60 2.03 36.51 15 4 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 5 H -0.25 -7.93 7.11 99.48 0.71 -7.22 15 6 H -0.25 -7.73 7.11 99.48 0.71 -7.03 15 7 C -0.26 -14.68 9.74 85.16 0.83 -13.85 15 8 H 0.06 3.03 7.75 -2.91 -0.02 3.01 15 9 N -0.33 -19.53 7.81 -186.45 -1.46 -20.99 15 10 C -0.24 -13.64 10.39 86.70 0.90 -12.74 15 11 C 0.01 0.63 5.88 -20.07 -0.12 0.52 15 12 C -0.17 -6.99 9.80 22.66 0.22 -6.77 15 13 C -0.09 -2.88 10.01 22.22 0.22 -2.66 15 14 C -0.19 -6.58 9.97 22.47 0.22 -6.36 15 15 C 0.08 3.38 6.71 22.53 0.15 3.53 15 16 O -0.51 -18.39 13.28 -79.64 -1.06 -19.45 15 17 C 0.01 0.45 6.75 23.06 0.16 0.61 15 18 O -0.47 -25.02 11.14 -76.81 -0.86 -25.88 15 19 H 0.31 13.18 8.29 -92.71 -0.77 12.41 15 20 H 0.05 2.80 7.95 -2.91 -0.02 2.78 15 21 H 0.13 4.61 8.06 -2.91 -0.02 4.59 15 22 H 0.16 3.76 8.06 -2.91 -0.02 3.73 15 23 H 0.15 4.00 8.06 -2.91 -0.02 3.97 15 24 H 0.40 10.91 9.07 -74.05 -0.67 10.24 15 25 H 0.37 18.61 9.06 -74.06 -0.67 17.94 15 Total: -1.00 -68.41 237.79 1.91 -66.50 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.11 Total: 36.67 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.06 Total: -35.89 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -1.16 Total: -58.48 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.91 Total: -45.32 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.51 kcal Total: -68.41 1.91 -66.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307010685.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.434 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds