Wall clock time and date at job start Mon Mar 30 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 119.99330 * 2 1 4 4 H 1.48501 * 109.47367 * 274.98270 * 3 2 1 5 5 H 1.48499 * 109.47244 * 34.98833 * 3 2 1 6 6 H 1.48509 * 109.46823 * 154.98638 * 3 2 1 7 7 C 1.40031 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99945 * 186.28530 * 7 2 1 9 9 C 1.41404 * 120.00141 * 6.28520 * 7 2 1 10 10 C 1.40653 * 119.82720 * 173.69236 * 9 7 2 11 11 C 1.38153 * 118.98052 * 179.97438 * 10 9 7 12 12 C 1.38963 * 118.58681 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.21921 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47527 * 89.99537 * 13 12 11 15 15 O 1.20829 * 119.99888 * 0.02562 * 14 13 12 16 16 O 1.34225 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.38752 * 119.56303 * 359.97438 * 12 11 10 18 18 N 1.31428 * 121.00832 * 0.02562 * 17 12 11 19 19 H 0.96997 * 120.00521 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.50901 * 0.27671 * 10 9 7 21 21 H 1.07997 * 120.70604 * 180.02562 * 11 10 9 22 22 H 1.09008 * 109.46791 * 209.99998 * 13 12 11 23 23 H 1.08996 * 109.46864 * 329.99209 * 13 12 11 24 24 H 0.96705 * 116.99702 * 180.02562 * 16 14 13 25 25 H 1.08003 * 119.49964 * 179.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4953 2.6200 0.8028 6 1 3.5876 1.4122 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2155 0.1019 9 6 1.3071 -2.4336 -0.1352 10 6 2.0204 -3.6384 -0.2689 11 6 1.3183 -4.8211 -0.3987 12 6 -0.0705 -4.7740 -0.3927 13 6 -0.8731 -6.0420 -0.5312 14 6 -1.1396 -6.6198 0.8348 15 8 -0.7212 -6.0591 1.8200 16 8 -1.8418 -7.7572 0.9572 17 6 -0.7135 -3.5520 -0.2571 18 7 -0.0290 -2.4367 -0.1346 19 1 -0.4851 0.8400 0.0004 20 1 3.1004 -3.6395 -0.2652 21 1 1.8378 -5.7622 -0.5027 22 1 -1.8202 -5.8206 -1.0233 23 1 -0.3137 -6.7627 -1.1277 24 1 -1.9875 -8.0888 1.8538 25 1 -1.7929 -3.5165 -0.2529 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307034024.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:49 Heat of formation + Delta-G solvation = -67.604903 kcal Electronic energy + Delta-G solvation = -12743.102363 eV Core-core repulsion = 10300.240548 eV Total energy + Delta-G solvation = -2442.861815 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.79199 -38.09620 -35.68857 -33.87226 -31.89231 -30.38602 -28.21224 -24.97799 -21.91460 -21.82755 -19.99128 -17.64834 -17.51446 -15.98476 -15.74047 -15.30672 -14.34227 -14.16147 -13.79593 -12.79107 -12.55217 -12.00720 -11.98158 -11.75991 -11.19764 -11.09506 -11.05206 -10.71717 -10.47216 -10.08386 -9.93178 -9.34986 -8.20850 -7.57824 -7.56788 -6.44133 -4.54314 2.61474 2.71181 3.03627 3.07628 3.10784 3.11578 3.69109 3.92753 4.73039 5.52633 5.65810 5.79637 6.00306 6.07920 6.13592 6.27968 6.79225 6.84647 6.87345 7.10038 7.35371 7.54456 7.68104 8.02596 8.19783 8.36344 8.63630 8.90214 10.09294 10.28552 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.073630 B = 0.007546 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.189490 B = 3709.801261 C = 3855.324168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.085 0.915 9 C 0.257 3.743 10 C -0.275 4.275 11 C -0.038 4.038 12 C -0.291 4.291 13 C -0.034 4.034 14 C 0.465 3.535 15 O -0.502 6.502 16 O -0.531 6.531 17 C 0.148 3.852 18 N -0.485 5.485 19 H 0.274 0.726 20 H 0.099 0.901 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.399 0.601 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -6.904 -1.177 7.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.297 4.297 11 C -0.062 4.062 12 C -0.297 4.297 13 C -0.072 4.072 14 C 0.307 3.693 15 O -0.388 6.388 16 O -0.343 6.343 17 C -0.019 4.019 18 N -0.197 5.197 19 H 0.085 0.915 20 H 0.117 0.883 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.256 0.744 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.174 -5.592 -1.199 6.119 hybrid contribution 0.710 -0.424 0.596 1.019 sum -1.465 -6.017 -0.603 6.222 Atomic orbital electron populations 1.70135 1.07272 1.27918 1.28017 1.26109 0.94914 1.01207 0.93558 0.86290 0.80547 0.80765 0.79090 1.19404 1.20053 1.18465 1.19695 0.94765 0.89608 1.41756 0.89707 1.18628 0.88383 0.91894 0.87809 1.21697 0.98687 0.93792 1.15571 1.20629 0.93085 0.96505 0.96013 1.19449 0.93740 0.93396 1.23068 1.19868 1.01642 0.96169 0.89533 1.24388 0.73808 0.77160 0.93931 1.90724 1.47869 1.59591 1.40609 1.84595 1.69862 1.41708 1.38126 1.22353 0.98419 0.88347 0.92790 1.68758 1.07632 1.25940 1.17381 0.91509 0.88264 0.88869 0.88527 0.88869 0.74395 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.21 11.49 55.55 0.64 -18.57 15 2 C 0.07 1.75 5.49 -17.34 -0.10 1.65 15 3 Si 0.91 18.67 29.56 -169.99 -5.03 13.64 15 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.43 -11.61 9.14 -37.71 -0.34 -11.96 15 8 H 0.08 2.15 7.85 -52.49 -0.41 1.73 15 9 C 0.26 7.19 6.55 -84.98 -0.56 6.63 15 10 C -0.27 -6.89 9.84 -38.70 -0.38 -7.28 15 11 C -0.04 -0.87 9.83 -39.34 -0.39 -1.26 15 12 C -0.29 -6.38 4.42 -104.16 -0.46 -6.84 15 13 C -0.03 -0.56 5.96 -29.04 -0.17 -0.73 15 14 C 0.47 8.00 8.32 36.00 0.30 8.30 15 15 O -0.50 -10.88 16.79 -18.75 -0.31 -11.19 15 16 O -0.53 -6.95 13.42 -39.24 -0.53 -7.48 15 17 C 0.15 3.64 10.85 -17.53 -0.19 3.45 15 18 N -0.49 -13.68 7.89 -11.12 -0.09 -13.77 15 19 H 0.27 6.64 8.29 -40.82 -0.34 6.30 15 20 H 0.10 2.29 8.06 -52.49 -0.42 1.87 15 21 H 0.09 1.81 8.06 -52.49 -0.42 1.39 15 22 H 0.10 1.39 8.09 -51.92 -0.42 0.97 15 23 H 0.09 1.32 8.09 -51.93 -0.42 0.90 15 24 H 0.40 3.53 9.10 45.56 0.41 3.95 15 25 H 0.12 2.53 8.06 -52.48 -0.42 2.10 15 LS Contribution 236.49 15.07 3.56 3.56 Total: -1.00 -32.35 236.49 -5.28 -37.63 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -1.24 Total: 4.21 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.29 Total: -8.03 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.55 Total: -32.34 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.84 Total: -18.67 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.35 -5.28 -37.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034024.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.977 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds