Wall clock time and date at job start Mon Mar 30 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 119.99330 * 2 1 4 4 H 1.48501 * 109.47367 * 274.98270 * 3 2 1 5 5 H 1.48499 * 109.47244 * 34.98833 * 3 2 1 6 6 H 1.48509 * 109.46823 * 154.98638 * 3 2 1 7 7 C 1.40031 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99945 * 186.28530 * 7 2 1 9 9 C 1.41404 * 120.00141 * 6.28520 * 7 2 1 10 10 C 1.40653 * 119.82720 * 173.69236 * 9 7 2 11 11 C 1.38153 * 118.98052 * 179.97438 * 10 9 7 12 12 C 1.38963 * 118.58681 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.21921 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47527 * 89.99537 * 13 12 11 15 15 O 1.20829 * 119.99888 * 0.02562 * 14 13 12 16 16 O 1.34225 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.38752 * 119.56303 * 359.97438 * 12 11 10 18 18 N 1.31428 * 121.00832 * 0.02562 * 17 12 11 19 19 H 0.96997 * 120.00521 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.50901 * 0.27671 * 10 9 7 21 21 H 1.07997 * 120.70604 * 180.02562 * 11 10 9 22 22 H 1.09008 * 109.46791 * 209.99998 * 13 12 11 23 23 H 1.08996 * 109.46864 * 329.99209 * 13 12 11 24 24 H 0.96705 * 116.99702 * 180.02562 * 16 14 13 25 25 H 1.08003 * 119.49964 * 179.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4953 2.6200 0.8028 6 1 3.5876 1.4122 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2155 0.1019 9 6 1.3071 -2.4336 -0.1352 10 6 2.0204 -3.6384 -0.2689 11 6 1.3183 -4.8211 -0.3987 12 6 -0.0705 -4.7740 -0.3927 13 6 -0.8731 -6.0420 -0.5312 14 6 -1.1396 -6.6198 0.8348 15 8 -0.7212 -6.0591 1.8200 16 8 -1.8418 -7.7572 0.9572 17 6 -0.7135 -3.5520 -0.2571 18 7 -0.0290 -2.4367 -0.1346 19 1 -0.4851 0.8400 0.0004 20 1 3.1004 -3.6395 -0.2652 21 1 1.8378 -5.7622 -0.5027 22 1 -1.8202 -5.8206 -1.0233 23 1 -0.3137 -6.7627 -1.1277 24 1 -1.9875 -8.0888 1.8538 25 1 -1.7929 -3.5165 -0.2529 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307034024.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:49 Heat of formation + Delta-G solvation = -90.284783 kcal Electronic energy + Delta-G solvation = -12744.085836 eV Core-core repulsion = 10300.240548 eV Total energy + Delta-G solvation = -2443.845289 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19146 -39.91497 -36.98263 -35.71188 -33.62426 -32.28731 -29.93980 -26.77714 -23.79580 -23.42604 -21.58653 -19.43402 -18.93724 -17.54575 -17.27970 -16.82665 -16.04969 -15.93522 -15.54262 -14.36346 -14.23764 -13.76902 -13.65371 -13.17663 -12.85671 -12.77958 -12.58741 -12.40519 -12.17006 -11.72532 -11.52994 -11.17257 -10.11807 -9.49675 -9.48192 -8.32236 -6.52399 0.80889 1.15864 1.38120 1.39692 1.50434 1.54828 2.22172 2.38756 2.87822 3.92527 4.04923 4.19450 4.34348 4.49675 4.75735 4.81861 4.95952 4.99819 5.20936 5.49287 5.67640 5.73372 5.84194 6.14509 6.27077 6.72161 6.94566 7.16176 8.17283 8.43465 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.073630 B = 0.007546 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.189490 B = 3709.801261 C = 3855.324168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.023 3.977 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.089 0.911 9 C 0.221 3.779 10 C -0.296 4.296 11 C -0.043 4.043 12 C -0.272 4.272 13 C -0.035 4.035 14 C 0.479 3.521 15 O -0.556 6.556 16 O -0.512 6.512 17 C 0.119 3.881 18 N -0.524 5.524 19 H 0.280 0.720 20 H 0.109 0.891 21 H 0.131 0.869 22 H 0.126 0.874 23 H 0.129 0.871 24 H 0.421 0.579 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -8.312 -1.690 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.501 4.501 8 H 0.107 0.893 9 C 0.096 3.904 10 C -0.318 4.318 11 C -0.067 4.067 12 C -0.277 4.277 13 C -0.073 4.073 14 C 0.323 3.677 15 O -0.447 6.447 16 O -0.325 6.325 17 C -0.046 4.046 18 N -0.236 5.236 19 H 0.090 0.910 20 H 0.127 0.873 21 H 0.149 0.851 22 H 0.144 0.856 23 H 0.147 0.853 24 H 0.282 0.718 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.331 -7.068 -1.718 7.638 hybrid contribution 0.632 -0.271 0.745 1.014 sum -1.698 -7.338 -0.973 7.595 Atomic orbital electron populations 1.70233 1.09024 1.29220 1.29483 1.27053 0.95741 1.04720 0.92378 0.85081 0.79012 0.75488 0.79390 1.18566 1.19225 1.17845 1.20043 0.95239 0.90738 1.44130 0.89304 1.19083 0.88907 0.93400 0.88967 1.21926 0.99461 0.94133 1.16306 1.21099 0.93702 0.97156 0.94695 1.19901 0.94111 0.94825 1.18879 1.19942 1.02781 0.94365 0.90186 1.24204 0.72979 0.77410 0.93118 1.90737 1.50338 1.61342 1.42245 1.84514 1.68321 1.39663 1.40042 1.22827 0.99398 0.88966 0.93404 1.68664 1.08206 1.28118 1.18653 0.90968 0.87272 0.85116 0.85637 0.85262 0.71772 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.25 11.49 21.84 0.25 -42.00 15 2 C 0.02 1.19 5.49 85.29 0.47 1.65 15 3 Si 0.99 39.02 29.56 68.60 2.03 41.04 15 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 7 C -0.47 -26.50 9.14 23.48 0.21 -26.29 15 8 H 0.09 4.67 7.85 -2.91 -0.02 4.65 15 9 C 0.22 12.77 6.55 40.24 0.26 13.03 15 10 C -0.30 -14.99 9.84 22.84 0.22 -14.76 15 11 C -0.04 -1.86 9.83 22.42 0.22 -1.64 15 12 C -0.27 -11.44 4.42 -19.57 -0.09 -11.53 15 13 C -0.03 -1.02 5.96 29.10 0.17 -0.85 15 14 C 0.48 14.88 8.32 71.23 0.59 15.47 15 15 O -0.56 -23.20 16.79 21.95 0.37 -22.83 15 16 O -0.51 -11.22 13.42 -51.37 -0.69 -11.91 15 17 C 0.12 5.87 10.85 84.88 0.92 6.79 15 18 N -0.52 -30.41 7.89 -189.10 -1.49 -31.90 15 19 H 0.28 14.00 8.29 -92.71 -0.77 13.24 15 20 H 0.11 5.10 8.06 -2.91 -0.02 5.08 15 21 H 0.13 4.64 8.06 -2.91 -0.02 4.62 15 22 H 0.13 3.04 8.09 -2.38 -0.02 3.02 15 23 H 0.13 2.95 8.09 -2.39 -0.02 2.93 15 24 H 0.42 5.78 9.10 -74.05 -0.67 5.11 15 25 H 0.13 5.76 8.06 -2.91 -0.02 5.74 15 Total: -1.00 -72.78 236.49 4.00 -68.78 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.55 Total: 16.94 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 2.99 Total: -18.11 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.24 Total: -73.90 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.32 Total: -34.75 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Total: -72.78 4.00 -68.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307034024.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.506 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds