Wall clock time and date at job start Mon Mar 30 2020 02:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.31667 * 125.85810 * 332.13902 * 3 2 1 5 5 C 1.33271 * 109.22145 * 179.97438 * 4 3 2 6 6 C 1.35375 * 108.41138 * 0.02562 * 5 4 3 7 7 N 1.36255 * 107.07445 * 359.97438 * 6 5 4 8 8 C 1.46497 * 126.49587 * 179.74166 * 7 6 5 9 9 C 1.53004 * 109.46987 * 265.02456 * 8 7 6 10 10 H 1.09004 * 109.46933 * 55.00177 * 9 8 7 11 11 O 1.42901 * 109.47107 * 295.00100 * 9 8 7 12 12 C 1.50703 * 109.47166 * 174.99954 * 9 8 7 13 13 H 1.08001 * 119.99604 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00101 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00117 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00223 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46953 * 59.99851 * 16 14 12 18 18 H 1.48503 * 109.47608 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47337 * 300.00181 * 16 14 12 20 20 H 1.08005 * 125.79810 * 179.97438 * 5 4 3 21 21 H 1.08003 * 126.46485 * 179.97438 * 6 5 4 22 22 H 1.09004 * 109.47368 * 25.02191 * 8 7 6 23 23 H 1.08998 * 109.47443 * 145.02678 * 8 7 6 24 24 H 0.96701 * 113.99721 * 300.00104 * 11 9 8 25 25 H 0.96995 * 120.00311 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3397 -0.9424 0.4987 5 6 4.6165 -0.6048 0.3199 6 6 4.6579 0.5916 -0.3123 7 7 3.3682 0.9802 -0.5179 8 6 2.9235 2.2168 -1.1654 9 6 2.6472 3.2795 -0.0999 10 1 3.5327 3.4089 0.5224 11 8 1.5493 2.8633 0.7146 12 6 2.3087 4.5864 -0.7697 13 1 2.2927 4.6524 -1.8476 14 6 2.0205 5.6979 -0.0066 15 7 2.0414 5.6178 1.3060 16 14 1.6016 7.3179 -0.8368 17 1 0.3952 7.1422 -1.6847 18 1 1.3333 8.3494 0.1973 19 1 2.7427 7.7500 -1.6832 20 1 5.4728 -1.1864 0.6278 21 1 5.5457 1.1354 -0.5995 22 1 3.7012 2.5733 -1.8409 23 1 2.0119 2.0235 -1.7307 24 1 0.7259 2.7285 0.2257 25 1 1.8383 6.3996 1.8429 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307208902.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:55 Heat of formation + Delta-G solvation = 43.225790 kcal Electronic energy + Delta-G solvation = -13014.718141 eV Core-core repulsion = 10608.955056 eV Total energy + Delta-G solvation = -2405.763085 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.86684 -36.48696 -36.09376 -33.30848 -32.35943 -29.73767 -28.73365 -25.38641 -22.98835 -21.67940 -20.96703 -18.28155 -17.02511 -15.69054 -15.58818 -14.80543 -14.49047 -14.28076 -13.77041 -13.37701 -13.03906 -12.77870 -12.62548 -12.42630 -11.55198 -11.39072 -11.07866 -11.01518 -10.35561 -10.05317 -9.93457 -9.22240 -8.80442 -8.43539 -8.22494 -6.23365 -4.46387 1.67422 2.51619 2.92440 3.16558 3.18033 3.23429 3.24843 3.87127 4.04386 4.23368 5.01059 5.08436 5.13850 5.51827 5.66345 5.75152 5.88234 6.18323 6.43358 6.82106 7.09032 7.31349 7.56817 7.68479 7.82035 8.09474 8.54328 9.03641 9.31182 10.80659 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.046382 B = 0.009247 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.536855 B = 3027.392052 C = 3317.437459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.312 3.688 3 C 0.256 3.744 4 N -0.447 5.447 5 C -0.031 4.031 6 C -0.018 4.018 7 N -0.406 5.406 8 C 0.061 3.939 9 C 0.221 3.779 10 H 0.068 0.932 11 O -0.556 6.556 12 C -0.584 4.584 13 H 0.061 0.939 14 C 0.084 3.916 15 N -0.852 5.852 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 H 0.178 0.822 21 H 0.184 0.816 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.345 0.655 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 -6.112 -4.870 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.006 4.006 3 C -0.002 4.002 4 N -0.168 5.168 5 C -0.185 4.185 6 C -0.158 4.158 7 N -0.085 5.085 8 C -0.060 4.060 9 C 0.162 3.838 10 H 0.085 0.915 11 O -0.358 6.358 12 C -0.622 4.622 13 H 0.079 0.921 14 C -0.125 4.125 15 N -0.486 5.486 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.195 0.805 21 H 0.201 0.799 22 H 0.120 0.880 23 H 0.103 0.897 24 H 0.189 0.811 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.876 -6.523 -3.919 8.540 hybrid contribution 0.270 1.791 -1.224 2.185 sum 4.147 -4.732 -5.143 8.126 Atomic orbital electron populations 1.81226 1.10617 1.06843 1.08172 1.23226 0.89621 0.93843 0.93887 1.17087 0.86119 0.89686 1.07342 1.70217 1.02460 1.25495 1.18654 1.22303 0.94153 0.96506 1.05514 1.23017 0.87243 0.99133 1.06430 1.45767 1.05918 1.16547 1.40290 1.23484 1.01556 0.82323 0.98628 1.19802 0.88440 0.88156 0.87364 0.91453 1.86658 1.20129 1.89904 1.39139 1.21370 1.52971 0.94587 0.93287 0.92108 1.25021 0.93750 0.98996 0.94695 1.70058 1.44320 1.30059 1.04128 0.86601 0.79128 0.82689 0.79226 1.19958 1.20988 1.19924 0.80524 0.79933 0.88040 0.89683 0.81138 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.51 18.54 41.84 0.78 -6.73 15 2 C 0.31 5.86 13.99 -22.47 -0.31 5.54 15 3 C 0.26 4.65 7.37 -156.27 -1.15 3.50 15 4 N -0.45 -7.83 11.27 -12.45 -0.14 -7.97 15 5 C -0.03 -0.44 11.84 -17.95 -0.21 -0.65 15 6 C -0.02 -0.25 11.57 -16.61 -0.19 -0.45 15 7 N -0.41 -6.83 2.76 -115.83 -0.32 -7.15 15 8 C 0.06 1.07 5.49 -4.04 -0.02 1.05 15 9 C 0.22 5.06 3.07 -27.88 -0.09 4.98 15 10 H 0.07 1.71 8.14 -51.93 -0.42 1.29 15 11 O -0.56 -13.73 11.35 -35.23 -0.40 -14.13 15 12 C -0.58 -14.61 8.76 -34.44 -0.30 -14.91 15 13 H 0.06 1.44 7.74 -52.49 -0.41 1.03 15 14 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 15 N -0.85 -24.05 12.84 55.43 0.71 -23.34 15 16 Si 0.90 20.00 29.54 -169.99 -5.02 14.97 15 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 20 H 0.18 1.81 8.06 -52.48 -0.42 1.39 15 21 H 0.18 1.86 8.06 -52.48 -0.42 1.44 15 22 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 23 H 0.08 1.45 7.96 -51.93 -0.41 1.04 15 24 H 0.34 8.00 8.66 45.56 0.39 8.39 15 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 240.16 15.07 3.62 3.62 Total: -1.00 -29.86 240.16 -4.40 -34.26 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -1.25 Total: 5.31 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.38 Total: 1.16 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.03 Total: -45.19 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.40 Total: -14.13 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.86 -4.40 -34.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307208902.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.490 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds