Wall clock time and date at job start Mon Mar 30 2020 02:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.31667 * 125.85810 * 332.13902 * 3 2 1 5 5 C 1.33271 * 109.22145 * 179.97438 * 4 3 2 6 6 C 1.35375 * 108.41138 * 0.02562 * 5 4 3 7 7 N 1.36255 * 107.07445 * 359.97438 * 6 5 4 8 8 C 1.46497 * 126.49587 * 179.74166 * 7 6 5 9 9 C 1.53004 * 109.46987 * 265.02456 * 8 7 6 10 10 H 1.09004 * 109.46933 * 55.00177 * 9 8 7 11 11 O 1.42901 * 109.47107 * 295.00100 * 9 8 7 12 12 C 1.50703 * 109.47166 * 174.99954 * 9 8 7 13 13 H 1.08001 * 119.99604 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00101 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00117 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00223 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46953 * 59.99851 * 16 14 12 18 18 H 1.48503 * 109.47608 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47337 * 300.00181 * 16 14 12 20 20 H 1.08005 * 125.79810 * 179.97438 * 5 4 3 21 21 H 1.08003 * 126.46485 * 179.97438 * 6 5 4 22 22 H 1.09004 * 109.47368 * 25.02191 * 8 7 6 23 23 H 1.08998 * 109.47443 * 145.02678 * 8 7 6 24 24 H 0.96701 * 113.99721 * 300.00104 * 11 9 8 25 25 H 0.96995 * 120.00311 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3397 -0.9424 0.4987 5 6 4.6165 -0.6048 0.3199 6 6 4.6579 0.5916 -0.3123 7 7 3.3682 0.9802 -0.5179 8 6 2.9235 2.2168 -1.1654 9 6 2.6472 3.2795 -0.0999 10 1 3.5327 3.4089 0.5224 11 8 1.5493 2.8633 0.7146 12 6 2.3087 4.5864 -0.7697 13 1 2.2927 4.6524 -1.8476 14 6 2.0205 5.6979 -0.0066 15 7 2.0414 5.6178 1.3060 16 14 1.6016 7.3179 -0.8368 17 1 0.3952 7.1422 -1.6847 18 1 1.3333 8.3494 0.1973 19 1 2.7427 7.7500 -1.6832 20 1 5.4728 -1.1864 0.6278 21 1 5.5457 1.1354 -0.5995 22 1 3.7012 2.5733 -1.8409 23 1 2.0119 2.0235 -1.7307 24 1 0.7259 2.7285 0.2257 25 1 1.8383 6.3996 1.8429 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307208902.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:55 Heat of formation + Delta-G solvation = 21.996027 kcal Electronic energy + Delta-G solvation = -13015.638733 eV Core-core repulsion = 10608.955056 eV Total energy + Delta-G solvation = -2406.683676 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 207.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.10924 -38.20488 -37.58501 -34.77441 -34.32469 -30.97954 -30.38016 -27.11676 -24.36438 -23.27115 -22.24288 -19.82653 -18.72944 -17.18646 -16.93771 -16.71945 -15.93869 -15.84790 -15.26003 -14.84107 -14.55918 -14.10686 -14.07088 -13.83890 -13.33154 -13.05300 -12.88787 -12.72393 -12.15091 -11.64003 -11.20574 -10.93257 -10.76667 -10.15524 -9.42886 -8.21099 -6.48981 0.34738 1.15543 1.42127 1.43147 1.50988 1.72678 1.86562 2.35749 2.50903 2.73153 3.06754 3.78813 3.96350 4.08068 4.21547 4.50501 4.58981 4.67024 5.17870 5.44475 5.58412 5.72023 5.81128 5.96359 6.28076 6.61341 6.88138 7.16784 7.35122 8.83323 Molecular weight = 207.07amu Principal moments of inertia in cm(-1) A = 0.046382 B = 0.009247 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.536855 B = 3027.392052 C = 3317.437459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.317 3.683 3 C 0.220 3.780 4 N -0.465 5.465 5 C -0.032 4.032 6 C -0.005 4.005 7 N -0.411 5.411 8 C 0.078 3.922 9 C 0.218 3.782 10 H 0.038 0.962 11 O -0.574 6.574 12 C -0.588 4.588 13 H 0.075 0.925 14 C 0.029 3.971 15 N -0.898 5.898 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.261 1.261 20 H 0.216 0.784 21 H 0.224 0.776 22 H 0.132 0.868 23 H 0.089 0.911 24 H 0.348 0.652 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 -6.075 -6.293 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C 0.000 4.000 3 C -0.036 4.036 4 N -0.187 5.187 5 C -0.185 4.185 6 C -0.144 4.144 7 N -0.092 5.092 8 C -0.043 4.043 9 C 0.159 3.841 10 H 0.056 0.944 11 O -0.378 6.378 12 C -0.626 4.626 13 H 0.093 0.907 14 C -0.175 4.175 15 N -0.534 5.534 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.185 1.185 20 H 0.233 0.767 21 H 0.241 0.759 22 H 0.150 0.850 23 H 0.107 0.893 24 H 0.192 0.808 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.370 -6.504 -5.365 9.996 hybrid contribution -0.079 1.706 -0.756 1.868 sum 5.291 -4.798 -6.121 9.407 Atomic orbital electron populations 1.81204 1.11229 1.07660 1.09285 1.23491 0.90054 0.93211 0.93234 1.17117 0.85899 0.90957 1.09650 1.70211 1.04035 1.25799 1.18638 1.23043 0.93900 0.96954 1.04640 1.23834 0.87146 0.98975 1.04434 1.45764 1.06872 1.16005 1.40531 1.23110 1.03070 0.81274 0.96860 1.19692 0.86850 0.89623 0.87885 0.94391 1.86619 1.20797 1.90092 1.40249 1.21854 1.51317 0.95386 0.94060 0.90685 1.25895 0.93840 1.02658 0.95097 1.70207 1.46558 1.30845 1.05800 0.85561 0.79239 0.78426 0.78063 1.19502 1.21638 1.18503 0.76705 0.75907 0.85034 0.89257 0.80794 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -16.22 18.54 19.00 0.35 -15.87 15 2 C 0.32 11.98 13.99 88.33 1.24 13.22 15 3 C 0.22 7.80 7.37 135.09 1.00 8.80 15 4 N -0.46 -15.58 11.27 -193.29 -2.18 -17.75 15 5 C -0.03 -0.81 11.84 83.81 0.99 0.19 15 6 C 0.00 -0.12 11.57 83.34 0.96 0.85 15 7 N -0.41 -13.01 2.76 -520.37 -1.43 -14.44 15 8 C 0.08 2.59 5.49 86.38 0.47 3.07 15 9 C 0.22 9.86 3.07 29.85 0.09 9.95 15 10 H 0.04 1.94 8.14 -2.38 -0.02 1.92 15 11 O -0.57 -28.72 11.35 -148.98 -1.69 -30.41 15 12 C -0.59 -28.82 8.76 25.60 0.22 -28.59 15 13 H 0.08 3.39 7.74 -2.91 -0.02 3.36 15 14 C 0.03 1.49 5.40 84.65 0.46 1.95 15 15 N -0.90 -51.41 12.84 21.45 0.28 -51.14 15 16 Si 0.96 40.59 29.54 68.60 2.03 42.62 15 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 18 H -0.29 -12.43 7.11 99.48 0.71 -11.72 15 19 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 20 H 0.22 3.47 8.06 -2.91 -0.02 3.44 15 21 H 0.22 3.40 8.06 -2.91 -0.02 3.38 15 22 H 0.13 3.55 8.14 -2.38 -0.02 3.53 15 23 H 0.09 2.89 7.96 -2.39 -0.02 2.87 15 24 H 0.35 16.43 8.66 -74.06 -0.64 15.79 15 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 15 Total: -1.00 -64.76 240.16 3.37 -61.39 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.58 Total: 16.18 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.44 Total: 9.42 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -2.98 Total: -99.20 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.69 Total: -30.41 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -64.76 3.37 -61.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307208902.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.384 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds